Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0151 ATGAGGGGGTTGTTCTATTTGGGTGGGAAACAAGAGGATGAAGAGGAAGAAATTAGAGGGAGAGAACAGCAGCTGTTTTCTTACAGATCAAACCAAGAGATCTATTCCAAGGGATTGGAGATATGGCCACAGTATCCCCACAATCAGCACCATCAACAAAACATGGAGAATTTCATATCCTTTGAAGTGGGGCCCAGCCGGAGGACCAACTTCATGATCAACGCCTCTAATCACGACTTAGTGTCCAGATCAGGGTTTGCGATGATGAGAGGAGGCGGCGGTGGTGGCGGCGGGATGAATTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGTAGCCATTTGAGATGCAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGCCAAACCCATGTCAAAAGTACTTGGGTTCCTGCTGCCAAGCGTCGCGAGCGTCAGCAACAACGACACCAAATTATGCAACATCATCAACAATTACGACCAGATCACCCCGATCCAACCACCCCTAAGAGGCACCGTGAAAATCATCCACCCAATGCCTCCACTTCTGGGTTAGAAGTGGCACACTTTCCACCCGAATTCAATTCTCCAGCCATTTTTCGATGTGTCAAAGTAAGCGCAATCGATAATGTGGAAGAACAATTAGCTTATCAGACAGCTGTGAACATCGGAGGGCATATGTTCAAAGGAATTCTCTACGACCAAGGCCCTGAAACCACCGTCGCCGGAGAAGACGGGGGCCAAGGGCTGGATCTCGTAATCGGAGCATCCAACGGAGGTGGGGGAAGAATGAATGAATCACCCCAATTTATGGAGCCTCCAATATATCCAATCCCGATCAACGCCTACACAACGGGTACGCAATTTTTCCCTCCCTCGAGGACATGA 888 49.32 MRGLFYLGGKQEDEEEEIRGREQQLFSYRSNQEIYSKGLEIWPQYPHNQHHQQNMENFISFEVGPSRRTNFMINASNHDLVSRSGFAMMRGGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQRHQIMQHHQQLRPDHPDPTTPKRHRENHPPNASTSGLEVAHFPPEFNSPAIFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPETTVAGEDGGQGLDLVIGASNGGGGRMNESPQFMEPPIYPIPINAYTTGTQFFPPSRT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 953358 955366 + MC11g0136 Mch11g0151 679085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0151 295 MobiDBLite consensus disorder prediction 140 183 - -
Mch11g0151 295 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 289 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Mch11g0151 295 Pfam Domain of unknown function (DUF702) 98 238 - -
Mch11g0151 295 NCBIfam putative zinc finger domain, LRP1 type 100 142 IPR006510 -
Mch11g0151 295 MobiDBLite consensus disorder prediction 140 177 - -
Mch11g0151 295 NCBIfam LRP1 C-terminal domain 189 237 IPR006511 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0151 Mch-Chr11:953358 Mch6g1241 Mch-Chr6:9741395 9.50E-34 dispersed
Mch1g1555 Mch-Chr1:16831414 Mch11g0151 Mch-Chr11:953358 3.59E-66 wgd
Mch10g0757 Mch-Chr10:5285591 Mch11g0151 Mch-Chr11:953358 6.11E-62 wgd
Mch11g0151 Mch-Chr11:953358 Mch8g0817 Mch-Chr8:5797384 4.69E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42544 PF05142 DUF702 3.90E-63 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0151 K27807 - csv:101220654 349.362