Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0153 | CAGGCCAGCTCTAGGAAGGGCTGCATGAGGGGCAAGGGCGGCCCTGAGAACGCTGCTTGCACTTTCAAAGGCGTCCGCCAGCGCACCTGGGGCAAATGGGTCGCCGAGATTCGCGAGCCGAATCGCGGGGCTCGCCTCTGGCTCGGCACCTTCGACACTTCCCAAGAAGCTGCCGTGGCCTATGACGCTGCCGCCAAGAAGCTCTACGGCTCTGAAGCTAAGCTCAACCTTCCCCAAATCTCTGCTGCGCAGCCGGTTGCTACTAATCCCCCGGTCTCAAATAATAATGATATTGCTTCTTCCAGTGCCACGCCAAACTCGTGCCCTACCAAGACGATGTCTCGACTGGAGGAGTTTGGAGGGCTCTGGGGGAACGAGAACGTGAACGTGGACGACTCAATATGGAAGGAGGCACTGATGTCTTTGGACTTTCCCATCATTGAAGATGAACAAGGGTTTTTC | 462 | 56.93 | QASSRKGCMRGKGGPENAACTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSQEAAVAYDAAAKKLYGSEAKLNLPQISAAQPVATNPPVSNNNDIASSSATPNSCPTKTMSRLEEFGGLWGNENVNVDDSIWKEALMSLDFPIIEDEQGFF | 154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 996211 | 996672 | - | MC11g0138 | Mch11g0153 | 679087 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0153 | 154 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0153 | 154 | FunFam | Ethylene-responsive transcription factor 2 | 20 | 79 | - | - | |
Mch11g0153 | 154 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0153 | 154 | CDD | AP2 | 20 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0153 | 154 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0153 | 154 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0153 | 154 | SUPERFAMILY | DNA-binding domain | 21 | 78 | IPR016177 | GO:0003677(InterPro) | |
Mch11g0153 | 154 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 2 | 109 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Mch11g0153 | 154 | Pfam | AP2 domain | 22 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0153 | 154 | Gene3D | AP2/ERF domain | 21 | 79 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0153 | Mch-Chr11:996211 | Mch4g2490 | Mch-Chr4:25654366 | 2.01E-35 | dispersed | |
Mch11g0153 | Mch-Chr11:996211 | Mch8g0812 | Mch-Chr8:5716897 | 3.01E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42545 | PF00847 | AP2 | 1.60E-15 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0153 | - | - | - | 0.0 |