Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0153 CAGGCCAGCTCTAGGAAGGGCTGCATGAGGGGCAAGGGCGGCCCTGAGAACGCTGCTTGCACTTTCAAAGGCGTCCGCCAGCGCACCTGGGGCAAATGGGTCGCCGAGATTCGCGAGCCGAATCGCGGGGCTCGCCTCTGGCTCGGCACCTTCGACACTTCCCAAGAAGCTGCCGTGGCCTATGACGCTGCCGCCAAGAAGCTCTACGGCTCTGAAGCTAAGCTCAACCTTCCCCAAATCTCTGCTGCGCAGCCGGTTGCTACTAATCCCCCGGTCTCAAATAATAATGATATTGCTTCTTCCAGTGCCACGCCAAACTCGTGCCCTACCAAGACGATGTCTCGACTGGAGGAGTTTGGAGGGCTCTGGGGGAACGAGAACGTGAACGTGGACGACTCAATATGGAAGGAGGCACTGATGTCTTTGGACTTTCCCATCATTGAAGATGAACAAGGGTTTTTC 462 56.93 QASSRKGCMRGKGGPENAACTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSQEAAVAYDAAAKKLYGSEAKLNLPQISAAQPVATNPPVSNNNDIASSSATPNSCPTKTMSRLEEFGGLWGNENVNVDDSIWKEALMSLDFPIIEDEQGFF 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 996211 996672 - MC11g0138 Mch11g0153 679087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0153 154 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0153 154 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Mch11g0153 154 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0153 154 CDD AP2 20 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0153 154 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0153 154 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0153 154 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677(InterPro)
Mch11g0153 154 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 109 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Mch11g0153 154 Pfam AP2 domain 22 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0153 154 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0153 Mch-Chr11:996211 Mch4g2490 Mch-Chr4:25654366 2.01E-35 dispersed
Mch11g0153 Mch-Chr11:996211 Mch8g0812 Mch-Chr8:5716897 3.01E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42545 PF00847 AP2 1.60E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0153 - - - 0.0