Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0176 | ATGCCTCTGAGAGGCATAATTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGGGAATACATCGAGAAAATCGAGGGAGGGAGTTCAAATGCGTCACCTCGGGAAGTCGCATATTGTGCCTGAGCAGCCTTCATCCTCTTTTCCGGTTCCGTTTGAACAAAGCCGTTGGGCAAATTTGCCTCCGGAGCTTCTCCTTGACATAATTCAGCGTGTAGAAGCGAGGGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCGTGTGCTTCAGTTTGCCGGTCTTGGCGGATGGTTACAAAGGAAGTTGTGAGAACTCCCGAACAGTGTGGCTGGATCACGTTCCCAATTTCTCTTAAGCAGCCGGGACCAAGAGACACCCCAATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACTGCAAGAAGAATCCGGCGGGCAATAAATACACAGTTCATTGTATCGTTAGTTCCAGACGATTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTCCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCGCATGACCAAAAATTGCGAACTGGTAGAACTAGCAGATTAAAAAGAAGAATCCATTTGAAACAGGTCTGTCCAAGTAAAACTGCGACCAACTATAAGGTTGCTGCCGTAGCGTTCGAGCTCAACATCCTCCGGACCAGAGGTCCCAGAAGAATGAGGTGCACCATGGATTCGATACCGGTTGCAGCGGTCGAGGAGGGTGGCACTGCCCCAACACCAACAGAGTTTAAAGACGGTATGAACGAGCATCATTCTTCCACATCAGTTTGCAAAGGAAAGAAGCCGATAACCGAGTCGCCGGAGCCTCAGGAACCAATAGCTCCATTGGTATTGAAGAACAAATCTCCGAGATGGCATGAGCAGCTACAGTGTTGGTGCCTAAATTTCAAAGGGCGTGTCACAGTTGCATCGGTAAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAATCAAAATGTGTCTGCAGCTGAGCAAGAGAAAGTGATTCTGCAGTTTGGAAAGATTGGGAAGGATATTTTCACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTGAGTAGCTTCGATACCAAACCAGCCTGTGAATGA | 1230 | 48.13 | MPLRGIIREQSEIREGSGNTSRKSREGVQMRHLGKSHIVPEQPSSSFPVPFEQSRWANLPPELLLDIIQRVEARETSWPSRRDVVACASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTARRIRRAINTQFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDQKLRTGRTSRLKRRIHLKQVCPSKTATNYKVAAVAFELNILRTRGPRRMRCTMDSIPVAAVEEGGTAPTPTEFKDGMNEHHSSTSVCKGKKPITESPEPQEPIAPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETNQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1149384 | 1152485 | + | MC11g0159 | Mch11g0176 | 679110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0176 | 409 | PANTHER | TUBBY-RELATED | 26 | 408 | - | - | |
Mch11g0176 | 409 | MobiDBLite | consensus disorder prediction | 274 | 311 | - | - | |
Mch11g0176 | 409 | Pfam | Tub family | 117 | 404 | IPR000007 | - | |
Mch11g0176 | 409 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Mch11g0176 | 409 | Gene3D | - | 50 | 104 | - | - | |
Mch11g0176 | 409 | CDD | F-box_AtTLP-like | 56 | 100 | - | - | |
Mch11g0176 | 409 | ProSitePatterns | Tub family signature 2. | 394 | 409 | IPR018066 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 387 | 409 | IPR000007 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 319 | 336 | IPR000007 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 239 | 266 | IPR000007 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 366 | 385 | IPR000007 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 172 | 188 | IPR000007 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 337 | 353 | IPR000007 | - | |
Mch11g0176 | 409 | PRINTS | Tubby superfamily signature | 188 | 212 | IPR000007 | - | |
Mch11g0176 | 409 | Gene3D | Tubby Protein; Chain A | 114 | 409 | IPR025659 | - | |
Mch11g0176 | 409 | ProSitePatterns | Tub family signature 1. | 337 | 350 | IPR018066 | - | |
Mch11g0176 | 409 | Pfam | F-box-like | 56 | 98 | IPR001810 | GO:0005515(InterPro) | |
Mch11g0176 | 409 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 409 | IPR025659 | - | |
Mch11g0176 | 409 | MobiDBLite | consensus disorder prediction | 8 | 29 | - | - | |
Mch11g0176 | 409 | SUPERFAMILY | F-box domain | 46 | 99 | IPR036047 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0790 | Mch-Chr10:5496465 | Mch11g0176 | Mch-Chr11:1149384 | 3.14E-185 | dispersed | |
Mch11g0176 | Mch-Chr11:1149384 | Mch7g1139 | Mch-Chr7:15273539 | 5.90E-144 | dispersed | |
Mch1g1508 | Mch-Chr1:16517309 | Mch11g0176 | Mch-Chr11:1149384 | 1.31E-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42547 | PF01167 | Tub | 2.90E-103 | CL0395 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0176 | K19600 | - | csv:101222500 | 720.309 |