Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0176 ATGCCTCTGAGAGGCATAATTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGGGAATACATCGAGAAAATCGAGGGAGGGAGTTCAAATGCGTCACCTCGGGAAGTCGCATATTGTGCCTGAGCAGCCTTCATCCTCTTTTCCGGTTCCGTTTGAACAAAGCCGTTGGGCAAATTTGCCTCCGGAGCTTCTCCTTGACATAATTCAGCGTGTAGAAGCGAGGGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCGTGTGCTTCAGTTTGCCGGTCTTGGCGGATGGTTACAAAGGAAGTTGTGAGAACTCCCGAACAGTGTGGCTGGATCACGTTCCCAATTTCTCTTAAGCAGCCGGGACCAAGAGACACCCCAATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCCGGTAATCTAAGTAAACTGTTGCTAACTGCAAGAAGAATCCGGCGGGCAATAAATACACAGTTCATTGTATCGTTAGTTCCAGACGATTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTCCTGGGGACCAAGTTTTCAATTTACGACAGTCAGCCTCCGCATGACCAAAAATTGCGAACTGGTAGAACTAGCAGATTAAAAAGAAGAATCCATTTGAAACAGGTCTGTCCAAGTAAAACTGCGACCAACTATAAGGTTGCTGCCGTAGCGTTCGAGCTCAACATCCTCCGGACCAGAGGTCCCAGAAGAATGAGGTGCACCATGGATTCGATACCGGTTGCAGCGGTCGAGGAGGGTGGCACTGCCCCAACACCAACAGAGTTTAAAGACGGTATGAACGAGCATCATTCTTCCACATCAGTTTGCAAAGGAAAGAAGCCGATAACCGAGTCGCCGGAGCCTCAGGAACCAATAGCTCCATTGGTATTGAAGAACAAATCTCCGAGATGGCATGAGCAGCTACAGTGTTGGTGCCTAAATTTCAAAGGGCGTGTCACAGTTGCATCGGTAAAGAACTTCCAGCTGGTTGCTGCTGCGGAGACGAATCAAAATGTGTCTGCAGCTGAGCAAGAGAAAGTGATTCTGCAGTTTGGAAAGATTGGGAAGGATATTTTCACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTGAGTAGCTTCGATACCAAACCAGCCTGTGAATGA 1230 48.13 MPLRGIIREQSEIREGSGNTSRKSREGVQMRHLGKSHIVPEQPSSSFPVPFEQSRWANLPPELLLDIIQRVEARETSWPSRRDVVACASVCRSWRMVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTARRIRRAINTQFIVSLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDQKLRTGRTSRLKRRIHLKQVCPSKTATNYKVAAVAFELNILRTRGPRRMRCTMDSIPVAAVEEGGTAPTPTEFKDGMNEHHSSTSVCKGKKPITESPEPQEPIAPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETNQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1149384 1152485 + MC11g0159 Mch11g0176 679110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0176 409 PANTHER TUBBY-RELATED 26 408 - -
Mch11g0176 409 MobiDBLite consensus disorder prediction 274 311 - -
Mch11g0176 409 Pfam Tub family 117 404 IPR000007 -
Mch11g0176 409 MobiDBLite consensus disorder prediction 1 29 - -
Mch11g0176 409 Gene3D - 50 104 - -
Mch11g0176 409 CDD F-box_AtTLP-like 56 100 - -
Mch11g0176 409 ProSitePatterns Tub family signature 2. 394 409 IPR018066 -
Mch11g0176 409 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Mch11g0176 409 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Mch11g0176 409 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Mch11g0176 409 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Mch11g0176 409 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Mch11g0176 409 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Mch11g0176 409 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Mch11g0176 409 Gene3D Tubby Protein; Chain A 114 409 IPR025659 -
Mch11g0176 409 ProSitePatterns Tub family signature 1. 337 350 IPR018066 -
Mch11g0176 409 Pfam F-box-like 56 98 IPR001810 GO:0005515(InterPro)
Mch11g0176 409 SUPERFAMILY Tubby C-terminal domain-like 105 409 IPR025659 -
Mch11g0176 409 MobiDBLite consensus disorder prediction 8 29 - -
Mch11g0176 409 SUPERFAMILY F-box domain 46 99 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0790 Mch-Chr10:5496465 Mch11g0176 Mch-Chr11:1149384 3.14E-185 dispersed
Mch11g0176 Mch-Chr11:1149384 Mch7g1139 Mch-Chr7:15273539 5.90E-144 dispersed
Mch1g1508 Mch-Chr1:16517309 Mch11g0176 Mch-Chr11:1149384 1.31E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42547 PF01167 Tub 2.90E-103 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0176 K19600 - csv:101222500 720.309