Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0183 ATGGTAAATATTAGCAGCCGCTACTTGAAAGTGACGATGACCCTTTTTCTGATTCACCGCTTTCTTTTCTTGCTGCAGGAACACGACGAGGCTTCACCGGAAACGACCGTGAAGATCAAGATTCGTGGGAGCGAAGAAGGTGGGAGTCCTTGGGATGACGGAGTTTATTCCACCGTTAGAAGCCTTGTGATCACTCACAGAGAGTGGATCTGTTCAATTCATGTCGAGTATGATAAGAATGGGGAATCAATTTGGGGTTCCAAGCGTGGCGGAAATGAAGGCTCCACTTCAGTGGTTTCTTTACATTATCCCAACGAGTATCTAATTTCAATTTCTGGCTACTACGGCAACTTACATAAGTGGAGAATTGCGGCTACTGTGATTCGATCGCTGACTCTCAAGACCAATAGAAATACTTATGGCCCATTTGGGATGGAAGAGGGAACCAGATTTTCATTCCCGACCATGGGGACGAAGATCGTCGGCTTCCATGGCAGGTGTGGTTGGTACCTCGATGCAATCGGACTCTACATACAGCCAATTCCAAACCAACTCCAGAACTTCAGCTTGGCACCCTTTGGAGGCAGAGGTGGGAGTCCTTGGGAGTATGTTTTTCAGTCGATCAGACGGCTGGTGATTAATCATGGGCTATGGATCCACTCCATTCAAATGCAATATGAGAATAAGGATGGGGAATTGGTATGGTCCAAGAAGCATGGAAGCAGAGATAATGGAAGCTCCAAATCAGAGGTTAGCCCAAGTTCCCTAATGCCCATAAACTGTTTGTTGAAATTCCCAACCGAGCAATTTGGAACAATTAAGAAAAAAACAGCGAAGTAG 840 45.83 MVNISSRYLKVTMTLFLIHRFLFLLQEHDEASPETTVKIKIRGSEEGGSPWDDGVYSTVRSLVITHREWICSIHVEYDKNGESIWGSKRGGNEGSTSVVSLHYPNEYLISISGYYGNLHKWRIAATVIRSLTLKTNRNTYGPFGMEEGTRFSFPTMGTKIVGFHGRCGWYLDAIGLYIQPIPNQLQNFSLAPFGGRGGSPWEYVFQSIRRLVINHGLWIHSIQMQYENKDGELVWSKKHGSRDNGSSKSEVSPSSLMPINCLLKFPTEQFGTIKKKTAK 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1177428 1180274 - MC11g_new0023 Mch11g0183 679117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0183 279 CDD Jacalin 48 179 IPR033734 GO:0030246(InterPro)
Mch11g0183 279 Gene3D - 182 256 IPR036404 -
Mch11g0183 279 Gene3D - 25 178 IPR036404 -
Mch11g0183 279 SUPERFAMILY Mannose-binding lectins 35 180 IPR036404 -
Mch11g0183 279 SUPERFAMILY Mannose-binding lectins 190 248 IPR036404 -
Mch11g0183 279 PANTHER JACALIN-RELATED LECTIN 3 188 249 - -
Mch11g0183 279 SMART Jacalin_2 48 180 IPR001229 -
Mch11g0183 279 FunFam Jacalin-related lectin 33 34 181 - -
Mch11g0183 279 Pfam Jacalin-like lectin domain 191 250 IPR001229 -
Mch11g0183 279 Pfam Jacalin-like lectin domain 43 177 IPR001229 -
Mch11g0183 279 ProSiteProfiles Jacalin-type lectin domain profile. 36 180 IPR001229 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0178 Mch-Chr11:1156294 Mch11g0183 Mch-Chr11:1177428 5.36E-136 dispersed
Mch11g0183 Mch-Chr11:1177428 Mch8g0808 Mch-Chr8:5697200 3.89E-40 dispersed
Mch11g0182 Mch-Chr11:1170672 Mch11g0183 Mch-Chr11:1177428 6.03E-39 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001431 0 9 1 0 0 2 0 2 3 3 0 3 1 3 3 0 3 0 0 3 2 2 2 3 4 5 3 6 9 0 72