Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0205 ATGGTTGATTTGGAGAATTCTTCGCCGGTTGCGGTTTCTGGAGAAGCTGGTTTATCCTCTTCAGGTTTTCATATTGAACCAGTGACGGTGGTGGCTCCGCCGAAGAAGAAACGGAACCTGCCTGGAATGCCAGATCCCGCGGCGGAGGTGATTGCTCTGTCGCCGGAGAGTTTGCTGGCGACGAACCGGTTCGTGTGCGAGATCTGCAACAAAGGTTTCCAGCGCGACCAGAACCTGCAGCTTCACCGGCGGGGCCACAACCTGCCGTGGAAGCTCCGGCAGCGGACGAACAATGAGGTGCGTAAGCGCGTGTATGTCTGCCCCGAACCGTCCTGCGTCCACCACAATCCGGCGAGGGCGCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAGATGCTCAAAGAAATACGCCGTACAATCCGATTGGAAAGCGCATATGAAAACTTGCGGAACACGAGAATACAAGTGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGCTTCATAACACATCGAGCATTTTGCGATGTGTTGGCGGAGGAAAGTGCTCGAGCCCAAACCCTAGCAGTTACAAACTCTGGAGTAAAGGAGTCCGCCGCTTCGCCTCCCCCGCCGCCGCTAACTCCGTCGACCACGGTGGTTTCTTCGGCCTTGTCCATCCACAGCTCAGAGGTGGCTGATAATCCGATAAGAGTGCCATCAGTATCCACGCCTGCTGCAACATGCTTGACCTCCGCGCCTGTCAATAGTACCACCAATGCTAGCGCTAACGGCAATAGCTCCAGCGATATGTTTGGAAATAGTACTGTTTATGCTTCTGCCTCGAATTCCGTGACAACAACCCGAATATCCCCACCACAGCCACCCAATTTATCCACCTACGATTGCCCTTCTGCTTCCGCCATTAATCCCACATCGCTTTCCCTCTCCACATCTCTCTATCTCTCCACTCAAGGATCCTCCCTCTTTGCGCCGGTTGACCAAGACCGTCTTCAGTACACCTGGGCCACTCAGCCGGCGGCTATGTCCGCCACCGCTTTGCTACAAAAGGCAGCGGAAATGGGGGCAACGGCGTCTAATCCTTCCTTGTTCCGAGGCTTTGGGATGGCTGCTTCTTCTTCTGGTCAAGATACCTCCGCTACTGCCCAATGGAGCATGAGTGTGAACCGAGATCAGCGGAGTGGTGGTTCGTTAACGCCTGGTTTAGAGCTTGAACTTCCCTCCGGACCGGCCGGCACCGGTCTGATGATGGCGGGTGGCCCATTTTGCTCGTTTGGGAGTCAGCCCATGACGCGCGACCTTCTTGGCCTTGGCTTAGGCGGCGGCGGGGCTTCCGCTAGTAGATTTTCCGCTTTGATCGCTTCCATGGGCGGTGCGTCCGGCTACGAAGTCGTAGCTTCAGTCCCTTGCGGTGGAAGTGGCGACGGAAGCTCGGCCGGAGACGGTTGGGATCGAGATGAACCAGACGGGAAACACTGA 1518 55.6 MVDLENSSPVAVSGEAGLSSSGFHIEPVTVVAPPKKKRNLPGMPDPAAEVIALSPESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNNEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLAVTNSGVKESAASPPPPPLTPSTTVVSSALSIHSSEVADNPIRVPSVSTPAATCLTSAPVNSTTNASANGNSSSDMFGNSTVYASASNSVTTTRISPPQPPNLSTYDCPSASAINPTSLSLSTSLYLSTQGSSLFAPVDQDRLQYTWATQPAAMSATALLQKAAEMGATASNPSLFRGFGMAASSSGQDTSATAQWSMSVNRDQRSGGSLTPGLELELPSGPAGTGLMMAGGPFCSFGSQPMTRDLLGLGLGGGGASASRFSALIASMGGASGYEVVASVPCGGSGDGSSAGDGWDRDEPDGKH 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1311215 1315188 + MC11g0178 Mch11g0205 679139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0205 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 452 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch11g0205 505 MobiDBLite consensus disorder prediction 483 505 - -
Mch11g0205 505 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 101 135 - -
Mch11g0205 505 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 166 205 - -
Mch11g0205 505 FunFam protein indeterminate-domain 12-like 43 111 - -
Mch11g0205 505 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Mch11g0205 505 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Mch11g0205 505 Gene3D Classic Zinc Finger 119 198 - -
Mch11g0205 505 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Mch11g0205 505 SMART c2h2final6 105 135 IPR013087 -
Mch11g0205 505 SMART c2h2final6 64 86 IPR013087 -
Mch11g0205 505 SMART c2h2final6 140 160 IPR013087 -
Mch11g0205 505 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Mch11g0205 505 Pfam Zinc-finger of C2H2 type 64 86 IPR013087 -
Mch11g0205 505 Gene3D Classic Zinc Finger 64 106 - -
Mch11g0205 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0205 Mch-Chr11:1311215 Mch1g1490 Mch-Chr1:16406121 1.45E-132 dispersed
Mch9g0770 Mch-Chr9:5767274 Mch11g0205 Mch-Chr11:1311215 4.60E-101 transposed
Mch1g1488 Mch-Chr1:16394687 Mch11g0205 Mch-Chr11:1311215 7.90E-128 wgd
Mch11g0205 Mch-Chr11:1311215 Mch8g0756 Mch-Chr8:5354386 8.13E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42548 PF12874 zf-met 0.0036 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0205 K25869 - mdm:114826446 509.605