Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0242 ATGTCCAAATTGGGCGCCATAGTTACCAAAATAAGCTATATAAGTCAGTTAAGACAACTTCATGCGCATCTTGTTCTCAACTCCCTCCATTCTCACAATTACTGGGTTTCTCTACTCATCACTCTCTGTACTCATCTTCAAGCTCATCCTGCCTATGCGGCTTCTATATTTACCTCCTCGACGTCCCCTAGTGTTTCTGTATACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCCCACAATGAGGTGGTTTCCATTTTCAGATGCATGCAGTGTTTAGACCTTAGGCCCCATCCCTTTGTTTATATATACTTGATCAAGTTGGCTGGGAAATCTGGAAATTTGTTCCATGCTTATGTCCTGAAGTTGGGTCACATTGACGACCATTTTGTCCGTAATGCTATCTTGGATATGTATGCAAAATATGGCCAAGTCGATCTTGCCAGGAAGCTGTTTGAGCAAATGGCTGATAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTATTGGAAGTCGGGAAAGGAGGCTGATGCAGTTATGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACTGCCATGGTTACTGGGTATGCTAAGATGAAGGACTTGGAGAGTGCAAGACGGTATTTTGATCAGATGCCAGAGAGAAGTGTAGTCTCGTGGAATGCAATGCTATCAGCTTATGCTCAAAATGAATGTGCAGAAGAGGCTTTGAAATTGTTTCAACAAATGCTGAAAGAAGGAATCGCTCCTGATGATACAACATGGGTGGCTGCAATTTCATCGTGCTCTTCCGTCGGTAATCCTAGCCTTGCTGATTACATTATAAGAAAGATCAACCAAAAGCATATCATTTTGAATAATTTTGTCAAGACAGCTTTACTTGATATGCATGCTAAATTTGGTAACCTTGAAATTGCTAGAGAAATTTTTGACGAATTGGGAGGGCAGAGGAATGCTGTTACATGGAATATCATGATATCAGCATATACAAGGTCTGGTAAACTGTTATTAGCTCGGGAACTATTTGATAATATGCCAAAAAGAGATGTTGTCTCGTGGAATTCAATGATAGCTGGTTATGCACAAAATGGAGAGTCGGCCATGTCAATTGAGCTCTTTAAAGAAATGATTACTTGTACGGACATACAACCGGATGAGGTTACCATAGCTAGTGTTTTATCAGCCTGTGGACATATTGGGGCTTCGAAATTGAGTTACTTGGTTGTAAACATTGTTCAAGAGAAGAACATTAAGTTGGGCATCTCAGCATTCAATTCTTTGATATTCATGTACTCTAAATGTGGAAACATGGCTCATGCCCATAGAATATTCCAAAATATGGGGACAAGAGATGTTGTTACTTTTAATACTCTAATTTCAGGGTTTGCAGCCAATGGTCGTGGGAAGGAAGCTATCGAGTTAGTATTAAAAATGGAGGAAGAAGGCATTGAACCAGACCACGTCACATATATTGGTGTTCTGACAGCATGTAGCCATGCAGGGCTGCTTAAAGAAGGTAAAAACATCTTTAAGTCAATTAAAGCACCTACGGTGGATCACTATGCTTGTATGGTTGATTTATTAGGAAGGGCAGGTGAATTAGATGAAGCCAAAATATTGATTCAATCTATGCCGATGAAACCTCATGCTGGTGTTTATGGCTCCTTGTTAAATGCCAGTCGAATTCACAAGAGAGTTGAGTTGGGAGAACTTGCTGCTAACAAGCTCTTTGAGCTTGAACCTCAAAACCCAGGAAATTATGTTTTACTTTCCAATATATATGCCTCAGCTGGAAGATGGGAAGATGTTAAAATGGTTAGAGAGAAGATGAAGAAGGTAGGTGTGAAGAAATCAGTTGGAATGAGTTGGGTGGAATATAAGGGTCAAGTGCATAAGTTCATTGTGGGTGATAGATCACATGAGTGGTCAAGAGATATTTATAGATTATTGGCTGAACTTGAAAGGAAGATGAAGAGGGTTGGCTTTGTAGCTGACAAAAGTTGTGCACTGCGAGATGTTGAGGAGGAAGAGAAGGAAGAAATGGTGGGAACTCACAGTGAGAAGTTGGCCATTTGTTTTGCTCTCCTTGTCAGTGAAGTGGGAACACCAATTAGAGTGGTAAAGAATTTGAGGATATGTTTGGATTGCCATACAGCTATTAAGATGGTCTCAAAGTTGGAGGAGAGAGTGATTGTCGTTCGTGATAATAATAGATCTGAGTATGATACACTTGGAACGTCAGTCAAAGCGGCACTGGTTTATCTTGGAACTGCTTTAGTGAAGCTTGTATGCCTTGCAACCTTTCTTAACGTGTCAGAGAATGATTCCTTTGACCCATATCAGGAACTGTTGAAAGCCCTTATTGGTTTCATAGATGTTGCCGGACTTTACTTTGCTTTGACCCAGTTGACTTATCGGAACATTTCTCAGAACCATAAATTTCAAGCAGTTGGACTCGGTTGGGCATTTGCTGATTCTGTTTTGCATAGATTGGCTCCACTTTGGGTCGGGGCCAGAGGACTAGAGTTTACTTGGGATTACATTCTTCAGAGCCTTGAAGCCAATGCAAATCTGGTGTTGAGTATATCCCTTGCTGCATTGGGATCTTTGATGTGGCTTAGGAAGAACAAGCCCAAGACTCTAATTCCCATAATTTACTTATGTGCATTGATTGTGGCTACCATGCCATCCATCACAAGCTACTTAAGGCGAGGACTGGGTTGGCATTTCCCAAAGGTGGTGGGATTTGAACTCTTCACCTCTCTGGTGATGGCTCTTATTAGTTGGCAGCTTTTTTCTGTTTGTCAGAGACCCTCCGTTTAA 2841 41.04 MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSSTSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAYVLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADAVMLFNMMPARNIITWTAMVTGYAKMKDLESARRYFDQMPERSVVSWNAMLSAYAQNECAEEALKLFQQMLKEGIAPDDTTWVAAISSCSSVGNPSLADYIIRKINQKHIILNNFVKTALLDMHAKFGNLEIAREIFDELGGQRNAVTWNIMISAYTRSGKLLLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMITCTDIQPDEVTIASVLSACGHIGASKLSYLVVNIVQEKNIKLGISAFNSLIFMYSKCGNMAHAHRIFQNMGTRDVVTFNTLISGFAANGRGKEAIELVLKMEEEGIEPDHVTYIGVLTACSHAGLLKEGKNIFKSIKAPTVDHYACMVDLLGRAGELDEAKILIQSMPMKPHAGVYGSLLNASRIHKRVELGELAANKLFELEPQNPGNYVLLSNIYASAGRWEDVKMVREKMKKVGVKKSVGMSWVEYKGQVHKFIVGDRSHEWSRDIYRLLAELERKMKRVGFVADKSCALRDVEEEEKEEMVGTHSEKLAICFALLVSEVGTPIRVVKNLRICLDCHTAIKMVSKLEERVIVVRDNNRSEYDTLGTSVKAALVYLGTALVKLVCLATFLNVSENDSFDPYQELLKALIGFIDVAGLYFALTQLTYRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYILQSLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYLCALIVATMPSITSYLRRGLGWHFPKVVGFELFTSLVMALISWQLFSVCQRPSV 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1530932 1535747 + MC11g0192 Mch11g0242 679176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0242 946 Gene3D Tetratricopeptide repeat domain 121 285 IPR011990 GO:0005515(InterPro)
Mch11g0242 946 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 410 518 - -
Mch11g0242 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Mch11g0242 946 PANTHER OS07G0578800 PROTEIN-RELATED 12 191 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Mch11g0242 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Mch11g0242 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Mch11g0242 946 FunFam Pentatricopeptide (PPR) repeat-containing protein 519 678 - -
Mch11g0242 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 221 IPR002885 -
Mch11g0242 946 SUPERFAMILY TPR-like 171 615 IPR011990 GO:0005515(InterPro)
Mch11g0242 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Mch11g0242 946 Pfam PPR repeat 164 192 IPR002885 -
Mch11g0242 946 Pfam PPR repeat 527 551 IPR002885 -
Mch11g0242 946 Pfam PPR repeat 67 93 IPR002885 -
Mch11g0242 946 Pfam PPR repeat 134 158 IPR002885 -
Mch11g0242 946 Pfam PPR repeat 297 319 IPR002885 -
Mch11g0242 946 Pfam Predicted membrane protein (DUF2053) 738 879 IPR019164 -
Mch11g0242 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Mch11g0242 946 Pfam DYW family of nucleic acid deaminases 667 745 IPR032867 GO:0008270(InterPro)
Mch11g0242 946 Gene3D Tetratricopeptide repeat domain 14 120 IPR011990 GO:0005515(InterPro)
Mch11g0242 946 Gene3D Tetratricopeptide repeat domain 409 510 IPR011990 GO:0005515(InterPro)
Mch11g0242 946 Gene3D Tetratricopeptide repeat domain 286 408 IPR011990 GO:0005515(InterPro)
Mch11g0242 946 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 189 277 - -
Mch11g0242 946 Gene3D Tetratricopeptide repeat domain 511 650 IPR011990 GO:0005515(InterPro)
Mch11g0242 946 Pfam E motif 569 631 IPR046848 -
Mch11g0242 946 Pfam PPR repeat 320 351 IPR002885 -
Mch11g0242 946 NCBIfam pentatricopeptide repeat 193 224 IPR002885 -
Mch11g0242 946 NCBIfam pentatricopeptide repeat 357 392 IPR002885 -
Mch11g0242 946 NCBIfam pentatricopeptide repeat 134 157 IPR002885 -
Mch11g0242 946 NCBIfam pentatricopeptide repeat 224 257 IPR002885 -
Mch11g0242 946 NCBIfam pentatricopeptide repeat 326 357 IPR002885 -
Mch11g0242 946 NCBIfam pentatricopeptide repeat 459 492 IPR002885 -
Mch11g0242 946 Pfam PPR repeat family 222 268 IPR002885 -
Mch11g0242 946 Pfam PPR repeat family 456 504 IPR002885 -
Mch11g0242 946 Pfam PPR repeat family 354 403 IPR002885 -
Mch11g0242 946 SUPERFAMILY TPR-like 194 587 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0242 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0242 Mch-Chr11:1530932 Mch5g1567 Mch-Chr5:16668675 4.12E-112 dispersed
Mch1g1452 Mch-Chr1:16176313 Mch11g0242 Mch-Chr11:1530932 6.68E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g840 . . . . . . . . . . . Cma09g00195 Car01g01463 . . Cpe06g00133 . . . . . . . . . . . . . . . . . Cone17ag1308 Cone20ag0164 Lsi04g01606 Csa03g04153 Chy04g00567 . . . Bda08g01317 . . Bpe05g00070 . . . . Cmo09g00191 . . . Car09g00165 . . Bhi09g02027 . . . . Mch11g0242 . Cla05g01993 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003631 2 2 2 3 1 1 2 1 2 1 2 0 2 1 1 2 1 4 2 1 1 1 1 1 0 1 1 2 1 2 44