Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0247 ATGAAGGGTTTGGATTGCTGTTTGTTCGTTTCTCTTCTTCTTCTATCTTCATTTTCATTTTTTTTGTCGGCTCTTTCCGATGCCGAAGTTTATTCCATCACACGCCGCCAGCTCTTGACCCTTCATGAGAACGATGATTTGTCCGATGATTATGAAACCAAAATCCAAGTCAACGAAACCTTCTCCAGTCCCAGACTTCGGCGAGCTTACATTGCCCTTCAAGCTTGGAAGATGGCTATTTATTCTGACCCATTGAACACCACTGTCAATTGGGTCGGTGCTGATGTCTGTTCCTACACCGGCGTATTTTGTGCCCCTGCCCTTGACGACCCTGAACTCGAAGTTGTCGCCGGCATTGATCTCAACCATGCCGACATTGCTGGCTATCTACCCGTCGAGCTTGGTTTGCTGACTGACATCGCCCTATTCCACATCAATAGCAACCGATTATGCGGTATCATTCCCACAAGCTTTTGGAGGCTCACCCTCCTTTACGAGTTCGACATTAGTAACAATCGATTCGTCGGACACTTCCCGGAAGTCGTCGTGAGGATCCCCAATCTCAAATACCTCGACCTTAGATTCAACGATTTCGAAGGCGAATTGCCCTCAACGCTTTTCACCAAGGAATTGGATGCCATTTTCCTCAACAACAATAGATTCACCTCCAACATCCCGGAGAATTTTGGCGACTCGCCGGCGTCGGTGATTGTAATTGCCAACAACAATTTCACGGGATGCATTCCGAGCAGCATTGGGAAAATGAAGAACACGTTGAAAGAGTTCGTGATGTTGAACAATGGACTTGCGGGCTGTATTCCAGGGGAGATTGGGTTGCTTGGAAATGCCACGGTTGTGGATGTTTCATACAACAAATTGAGTGGGATCTTACCAAAGAGCTTTGATGGGTTGAAGGGAGTGGAGGCGTTGGATATTTCTGGGAATTCGTTGACTGGGTTTGTGGCGGAGGGCGTTTGTAACTTGCCCAAATTGGTTAATTTCACATTCTCTAACAATTTCTTCAACGGCGAGGCCGAGAGCTGCGTGCCCCAGAACAGAAAGAACATTGTGTTGGATGATTCCAGCAATTGTTTGCCAGAGAGGCCGAACCAGAAGACGACACAAATTTGTACTCCCGTGATCCATAAGACTGTTGATTGCAGCAAGGCTAAATGCGGCGGAGGATTGTCACCACCATCGCCATCCACATCGACATCCATGCCACCAAAGCTGGACCAGCCGCAACCACCGAAGCAGGAGATTCCCGAGATTGAGGCACCAAAATCATCCATAGTACCCGAGCCTAAAAGTCCACCATCAACTCCAGTGGATGATTCTCATGATCAATCACCAATCCCAAGATACCGACCACCTCCTCCACAAGTTCATTCCCCACCACCACCCATCCAATCTCCTCCTGCACCGGTTCACTCCTCACCACCACCTGCACCAGTGCACTCCCCACCACCACCCGTCCAATATCCTCCACTCGCACCAGTTCACTCCCCACCACCATCGGTGCACTCTCCACCACCACCCGTCCAATCTCTTCCCCCACCTGTCCAATCTCCTCCACCACCGGTGCACTCTCCACCACCACCCGTCAAATCTCCTCCACCACCTGTTCACTCCCCACCACCACCGGTGCACTCTCCACCACCACCTGTCCAATCTTGTCCACCACTGGTGCACTCTCCACCACCACCCGTCCAATCTCCTCCACCACCTGTTCAGTCCTTACCACCACCTGTCCAATCTCCACCGCCACCAGTTCACTCCCCACCACCACCTGTCCAATCTCCTCCACCACCGGTTCACTCCCCACCACCACCCGTCCAATCTCCACCACCACCACCAGTGCACTCCCCACCACCTCCCGTCCAATCTCCACCACCACCACCAGTGCACTCTCCTCCACCCCCAGTCCAATCCCCTCCACCTCCAGTCCAATCTTCGCCACCACTGGTGCACTCTCCTCCACCTCCCGTCCAATCCCCACCACCTTCAGTCCAATCTCCCCCGCCACCGGTGCATTCCCCTCCACCTCCTGTTCAATCCCCACCACCACCGGTGCACTCGCCCCCACCACCAGTTCACTCCCCACCACCTCCCGTCCAATCTCCGCCACCGCCGATGCATTCTCCTCCACCTCCCGTCCAATCTCCACCACCACCGGTGAACTCCCCTCCACCTCCTGTCCAGTCTCCTCCACCATCGGTTTTCTCGCCACCCCCACCTGTCCAGTCTCCTCCACCTCCCGTCCAATCTCCACCTCCACCAATCCACTCTCCTCCACCACCAGTTTTCTCCCCACCTCCACCAGTTTTCTCTCCACCACCACCACCGATTTTCTCACCGCCACCTCCAGTGCACTCCCCACCTCCTCCAGTCCAGTCTCCGCCACCACCTTCTCCACTAGAGGACATCATTCTTCCACCAAATTTGGGCTTCGAGTACTCATCACCCCCTCCACCAATGTTCCCGGGTTACTAA 2493 53.67 MKGLDCCLFVSLLLLSSFSFFLSALSDAEVYSITRRQLLTLHENDDLSDDYETKIQVNETFSSPRLRRAYIALQAWKMAIYSDPLNTTVNWVGADVCSYTGVFCAPALDDPELEVVAGIDLNHADIAGYLPVELGLLTDIALFHINSNRLCGIIPTSFWRLTLLYEFDISNNRFVGHFPEVVVRIPNLKYLDLRFNDFEGELPSTLFTKELDAIFLNNNRFTSNIPENFGDSPASVIVIANNNFTGCIPSSIGKMKNTLKEFVMLNNGLAGCIPGEIGLLGNATVVDVSYNKLSGILPKSFDGLKGVEALDISGNSLTGFVAEGVCNLPKLVNFTFSNNFFNGEAESCVPQNRKNIVLDDSSNCLPERPNQKTTQICTPVIHKTVDCSKAKCGGGLSPPSPSTSTSMPPKLDQPQPPKQEIPEIEAPKSSIVPEPKSPPSTPVDDSHDQSPIPRYRPPPPQVHSPPPPIQSPPAPVHSSPPPAPVHSPPPPVQYPPLAPVHSPPPSVHSPPPPVQSLPPPVQSPPPPVHSPPPPVKSPPPPVHSPPPPVHSPPPPVQSCPPLVHSPPPPVQSPPPPVQSLPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPPVHSPPPPVQSPPPPPVHSPPPPVQSPPPPVQSSPPLVHSPPPPVQSPPPSVQSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPPVQSPPPPMHSPPPPVQSPPPPVNSPPPPVQSPPPSVFSPPPPVQSPPPPVQSPPPPIHSPPPPVFSPPPPVFSPPPPPIFSPPPPVHSPPPPVQSPPPPSPLEDIILPPNLGFEYSSPPPPMFPGY 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1553378 1555870 + MC11g_new0053 Mch11g0247 679181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0247 830 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Mch11g0247 830 Gene3D Ribonuclease Inhibitor 236 379 IPR032675 -
Mch11g0247 830 MobiDBLite consensus disorder prediction 391 830 - -
Mch11g0247 830 MobiDBLite consensus disorder prediction 452 809 - -
Mch11g0247 830 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Mch11g0247 830 MobiDBLite consensus disorder prediction 402 416 - -
Mch11g0247 830 Gene3D Ribonuclease Inhibitor 69 235 IPR032675 -
Mch11g0247 830 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 678 IPR051582 -
Mch11g0247 830 SUPERFAMILY L domain-like 80 365 - -
Mch11g0247 830 Pfam Leucine rich repeat 284 339 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0247 Mch-Chr11:1553378 Mch11g0250 Mch-Chr11:1563635 3.56E-164 dispersed
Mch11g0245 Mch-Chr11:1548519 Mch11g0247 Mch-Chr11:1553378 5.56E-202 proximal
Mch11g0247 Mch-Chr11:1553378 Mch11g0248 Mch-Chr11:1558881 4.35E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0247 - - - 0.0