Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0248 ATGAAGGGTCTGAGTTGCTGTTTGTTCGTTTCTCTTATTCTTCTATCTTCTTTTTCATTTTTTTCGTCGGCTCTTTCCGATGCCGAAGTTTATTCCATCACACGCCGTCAGCTCCTGACCCTTCATGAGAACGATGATTTGCTCGATGATTATGAAACCAAAATCCAGGTCAACGAAACTTTCTCCAGCCCTAGACTTCGACGAGCTTACATTGCTCTCCAAGCTTGGAAGATGGCTATTTATTCTGACCCATTGAACACCACTGCCAATTGGGTCGGCACCGATGTCTGTTCCTACACCGGCGTCTTCTGTGCCCCTGCCCTTGACAACCCTAAACTCGAAGTTGTCGCCGGCATTGATCTCAACCATGCCGACATTGCGGGCTACCTACCCGTCGAGCTCGGTTTGTTGACTGACATTGCCTTGTTCCACATCAATAGCAACCGATTCTGTGGTATCGTTCCCACAAGCTTTTGGAGGCTCACCCTCCTTTACGAGTTCGACATTAGTAACAATCGATTCGTCGGCCACTTCCCGGAAGTCGTCGTGAGGATCCCCAATCTCAAATACCTCGACCTTAGATTCAACGATTTCGAAGGCGAATTGCCCTCAACGCTTTTCACCAAGGAATTGGATGCCATTTTCCTCAACAACAATAGGTTCACCTCCAACATCCCGGAGAATTTTGGCGACTCCCCAGCGTCGGTGATTGTAATTGCCAACAACAATTTCACGGGATGCATTCCGAGCAGCATTGGGAAAATGGGGAACACGTTGAAAGAGTTCGTGATGTTGAACAATGGACTTGCGGGCTGTATTCCAGGGGAGATTGGGTTGCTTGGAAATGCCACGGTGGTAGATGTTTCATACAACAAATTGAGTGGGATCTTACCCAAGAGCTTTGATGGGTTGAAGGGAGTGGAGGCATTAGATATTTCTGGGAATTCGTTGACTGGGTTTGTGGCGGAGGGCGTTTGCAACTTGCCCAAATTGGTTAATTTCACATTCTCTAACAATTTCTTCAATGGCGAGGCCGAGAGTTGCGTGCCCCATAACAAAAAGAACATTGTGTTAGATGATTCAAGCAATTGTTTGTCAAAGAGGCCTAACCAAAAAACGACAGAAATTTGTACTTCAGTGATCCATAAAACCGTTGATTGCGGTAAGGCTAAATGCGGCGGAGGATCGTCACCACCATCACCGACCACATCGACGTCCATGCCACCAAAGCCGGAACAGCCCCCACCCGCACCGATCCAATCTCCACCACCAGCACCGATCCAATCTCCACCACCAGCACCGGTTCAATCTCCACCACCCGCACCCGTGCAATCTCCACCACCCGCACCCGTGCAATCTCCACCACCACCGATCTACTCCACACCACCACCGGTGCACTCTCCACCACCACCGGTGCACTCCCCACCACCACCCGTCCAATCTCCTCCACCACCACCGGTGCACTCTCCTCCACCACCGGTCTACTCCCCACCAACACCCGTCCAATCTCCTCCACAACCACCGGTGCACTCTCCACCACCACCGATCCAATCTCCTCCACAACCACCGGTGCACTCTCCACCACCACCGGTCTACTCCCCACCACCATCGGTGCACTCCCCACCACCACCTGTCCAATCTCCTCCACCACCAGTTTTCTCCCCACCCCCACCGGTTTTCTCTCCACCACCTCCGGTGCACTCCCCGCCTCCTCCAGTCCATTCACCACCGCCTCCGGTCCACTCTCCACCACCACCTTCTCCATCTCCCTCTCCTCCTCCTCCAGTCGTCTCTCCACCGTCTCCACTAGAGGACATCATTCTTCCACCAAATATTGGCTTTGAATACTCATCACCTCCTCCACCGCTATTCCCTGGATACTAA 1884 52.02 MKGLSCCLFVSLILLSSFSFFSSALSDAEVYSITRRQLLTLHENDDLLDDYETKIQVNETFSSPRLRRAYIALQAWKMAIYSDPLNTTANWVGTDVCSYTGVFCAPALDNPKLEVVAGIDLNHADIAGYLPVELGLLTDIALFHINSNRFCGIVPTSFWRLTLLYEFDISNNRFVGHFPEVVVRIPNLKYLDLRFNDFEGELPSTLFTKELDAIFLNNNRFTSNIPENFGDSPASVIVIANNNFTGCIPSSIGKMGNTLKEFVMLNNGLAGCIPGEIGLLGNATVVDVSYNKLSGILPKSFDGLKGVEALDISGNSLTGFVAEGVCNLPKLVNFTFSNNFFNGEAESCVPHNKKNIVLDDSSNCLSKRPNQKTTEICTSVIHKTVDCGKAKCGGGSSPPSPTTSTSMPPKPEQPPPAPIQSPPPAPIQSPPPAPVQSPPPAPVQSPPPAPVQSPPPPIYSTPPPVHSPPPPVHSPPPPVQSPPPPPVHSPPPPVYSPPTPVQSPPQPPVHSPPPPIQSPPQPPVHSPPPPVYSPPPSVHSPPPPVQSPPPPVFSPPPPVFSPPPPVHSPPPPVHSPPPPVHSPPPPSPSPSPPPPVVSPPSPLEDIILPPNIGFEYSSPPPPLFPGY 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1558881 1561284 + MC11g_new0054 Mch11g0248 679182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0248 627 Pfam Leucine rich repeat 284 339 IPR001611 GO:0005515(InterPro)
Mch11g0248 627 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Mch11g0248 627 Pfam Leucine Rich Repeat 187 206 IPR001611 GO:0005515(InterPro)
Mch11g0248 627 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 624 IPR051582 -
Mch11g0248 627 MobiDBLite consensus disorder prediction 389 627 - -
Mch11g0248 627 MobiDBLite consensus disorder prediction 402 606 - -
Mch11g0248 627 SUPERFAMILY L domain-like 79 367 - -
Mch11g0248 627 Gene3D Ribonuclease Inhibitor 236 383 IPR032675 -
Mch11g0248 627 PRINTS Pistil-specific extensin-like signature 480 498 IPR003882 -
Mch11g0248 627 PRINTS Pistil-specific extensin-like signature 446 469 IPR003882 -
Mch11g0248 627 PRINTS Pistil-specific extensin-like signature 588 609 IPR003882 -
Mch11g0248 627 Gene3D Ribonuclease Inhibitor 69 235 IPR032675 -
Mch11g0248 627 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0248 Mch-Chr11:1558881 Mch7g0650 Mch-Chr7:11166773 3.15E-58 dispersed
Mch11g0248 Mch-Chr11:1558881 Mch11g0250 Mch-Chr11:1563635 4.10E-144 proximal
Mch11g0247 Mch-Chr11:1553378 Mch11g0248 Mch-Chr11:1558881 4.35E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0248 - - - 0.0