Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0266 ATGCAAAGCAACGGCTCTGATTCGCAGCCGCAGGAGCCAAATCAACGGCTCCAACAGCCGCAGCAGTGGATGCCAATGCAGTATCCGCCGGCGGCGATGGTAATGCCGCCCCATATGATGACGCCGCAGCCTTACATGCCGCCGCCCTTGCCGCCGCAGTATATGCATTATCACCACCAATATCAGCATCACCATCTCCCTATACAGCATTCCCAGCCTCTACAGGGATCTGGCGGCGAAAACAAGACGATTTGGGTCGGCGACTTGCACCATTGGATGGATGAGAGTTACCTCCATAACTGCTTTGCTTCCATCGGCGAGGTCCAAATTCTTCTTTTCAAGAATTTGCTTAAGAATGCAGCAGAGCAGTATATTTTGTTAATCTTTTTTGGAATTGAAAAAATTTCAACGAGACTTGGGATGTACATGGATATGATTACTTCTAATGAAATCATCCTTGGCATACCCAAACAATCTTTTTTTAATATAACAATCCAATTGTTATTAGGTTGGCATGATCGTGCTGAGCATAGTTTGTTCTGTTTCTGTATGATGCAGATTTCATCTATCAAGGTTATTCGTAATAAGCAAACTGGTTTGTCTGAGGGGTATGGATTTGTAGAATTTTTTGCTCATGCAACAGCTGAGAAAGCTCTTCAGAACTATTCTGGAATGTTTATGCCAAATACAGAGCAGGCTTTCCGCCTGAATTGGGCGACATTTAGCACGGGTGACAAGCGATCTGACAATGATCCCGATCTTTCAATCTTCGTCGGAGACTTAGCTGCAGATGTTACTGATACTTTGTTGTATGAAACTTTTTCTAGTAAATTTCCTTCTGTTAAAGCTGCAAAAGTTGTCATTGATGCCAACACTGGTCGATCAAAGGGTTATGGTTTTGTAAGGTTTGGAGATGATAATGAGAGGTCTCAGGCCATGACTGAAATGAATGGTGTTTATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACACCTAGAAAGTCTTCTGGATACCAGCAACAATATTCTTCACAAGGAGGATATTCTTCAAATGGTTCCTTTAGCCAAGGTCTCCAATCTGAAGGAGATTCTGCAAATACAACAATATTTGTTGGAGGGCTCGATCCTAACGTCACTGATGAAGATCTGAGGCAGCCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATTCCAGTTGGTAAAGGATGTGGGTTTGTCCAATTCGCCAACAGAAATGATGCCGAAGAGGCTTTGCAGAAACTAAATGGAACTGTAATTGGCAAGCAAACTGTTCGTCTATCTTGGGGCCGAAATCCGGCAAATAAGCAGGCAAATTACCCTCCTCTCCAACTAGATTTCGGGAACCAGTGGAATGGAGCTTACTATGGAGGGCACATGTATGATGGCTATGGATATGGTCTGCCTCCTCATGATCCAAGTATGTACCACGCAGCTTATGGAGCTTACCCTGTCTATGGAAGCCATCAACAACAAGTAATC 1506 43.89 MQSNGSDSQPQEPNQRLQQPQQWMPMQYPPAAMVMPPHMMTPQPYMPPPLPPQYMHYHHQYQHHHLPIQHSQPLQGSGGENKTIWVGDLHHWMDESYLHNCFASIGEVQILLFKNLLKNAAEQYILLIFFGIEKISTRLGMYMDMITSNEIILGIPKQSFFNITIQLLLGWHDRAEHSLFCFCMMQISSIKVIRNKQTGLSEGYGFVEFFAHATAEKALQNYSGMFMPNTEQAFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDTLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYSSNGSFSQGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTVIGKQTVRLSWGRNPANKQANYPPLQLDFGNQWNGAYYGGHMYDGYGYGLPPHDPSMYHAAYGAYPVYGSHQQQVI 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1682593 1686184 - MC11g0209 Mch11g0266 679200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0266 502 CDD RRM1_SECp43_like 83 242 - -
Mch11g0266 502 MobiDBLite consensus disorder prediction 1 21 - -
Mch11g0266 502 Gene3D - 246 350 IPR012677 -
Mch11g0266 502 SMART rrm1_1 255 329 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 SMART rrm1_1 166 237 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 SMART rrm1_1 369 436 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 Gene3D - 178 205 IPR012677 -
Mch11g0266 502 SUPERFAMILY RNA-binding domain, RBD 186 241 IPR035979 GO:0003676(InterPro)
Mch11g0266 502 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 129 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Mch11g0266 502 Gene3D - 75 245 IPR012677 -
Mch11g0266 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 241 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 SUPERFAMILY RNA-binding domain, RBD 59 109 IPR035979 GO:0003676(InterPro)
Mch11g0266 502 FunFam Polyadenylate-binding protein RBP47 350 475 - -
Mch11g0266 502 Gene3D - 351 447 IPR012677 -
Mch11g0266 502 SUPERFAMILY RNA-binding domain, RBD 358 457 IPR035979 GO:0003676(InterPro)
Mch11g0266 502 CDD RRM2_SECp43_like 253 332 - -
Mch11g0266 502 MobiDBLite consensus disorder prediction 334 362 - -
Mch11g0266 502 SUPERFAMILY RNA-binding domain, RBD 237 354 IPR035979 GO:0003676(InterPro)
Mch11g0266 502 CDD RRM3_NGR1_NAM8_like 367 438 - -
Mch11g0266 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 333 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 MobiDBLite consensus disorder prediction 331 362 - -
Mch11g0266 502 Pfam RNA recognition motif 187 230 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 Pfam RNA recognition motif 256 325 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 Pfam RNA recognition motif 370 433 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 440 IPR000504 GO:0003723(InterPro)
Mch11g0266 502 FunFam Polyadenylate-binding protein RBP47B 242 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0266 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0266 Mch-Chr11:1682593 Mch2g1174 Mch-Chr2:8009748 1.49E-146 dispersed
Mch1g1053 Mch-Chr1:13486544 Mch11g0266 Mch-Chr11:1682593 2.83E-11 transposed
Mch2g0503 Mch-Chr2:3604200 Mch11g0266 Mch-Chr11:1682593 3.29E-07 transposed
Mch4g0474 Mch-Chr4:3043538 Mch11g0266 Mch-Chr11:1682593 1.34E-13 transposed
Mch5g0216 Mch-Chr5:1438753 Mch11g0266 Mch-Chr11:1682593 3.65E-06 transposed
Mch5g0664 Mch-Chr5:4454368 Mch11g0266 Mch-Chr11:1682593 1.33E-07 transposed
Mch9g2226 Mch-Chr9:22744608 Mch11g0266 Mch-Chr11:1682593 2.63E-07 transposed
Mch11g0266 Mch-Chr11:1682593 Mch8g0718 Mch-Chr8:5097069 1.43E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117