Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch11g0298 | ATGGAAAATGATCATGAGCAGCTAAAATCGGAGGATCAGATGGAGATAATCATGATGATGCAGCAGATGGAAAAAATCCCACAATTTTGCAGCTCTTATAACGACCTCTCCCCGCCGTCCGATTTCAGCACGAGCAGCAACATCAGCAGCAGCGACCCACATTGCCTTGGAAACGTTCTACAAGGCGCAGAATCAGCATCGCCGATGGGTTTGGGTCGAGTCCCCAACAGCGGCGAAGAAGAGGCGTCGCAGAAGCAGAGCTCGGTGGCGGCGATGAGGGAAATGATATTCCGAATGGCGGTGATGCAACCGATCCACATAGACCCGGAATCGGTGAAGGCGCCAAAAAGGAGGAACGTGAAGATCTCGACGGACCCACAAAGCGTAGCGGCTCGGCATAGGAGAGAGAGAATTAGCGAGAGAATTAGGATACTTCAGAGACTGGTCCCCGGCGGTACCAAAATGGACACGGCTTCAATGTTGGACGAGGCCATTCATTACGTTAAATTTTTGAAGACCCAAGTGAAGTCGCTTCAGAGAGCTGCCACTGCCGCCAACTCCCCGATCACTCCCTTTCCTTTGGAAATGTCTACTGGAAGCTATGTTCCT | 609 | 51.56 | MENDHEQLKSEDQMEIIMMMQQMEKIPQFCSSYNDLSPPSDFSTSSNISSSDPHCLGNVLQGAESASPMGLGRVPNSGEEEASQKQSSVAAMREMIFRMAVMQPIHIDPESVKAPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVKSLQRAATAANSPITPFPLEMSTGSYVP | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1879945 | 1880553 | - | MC11g0237 | Mch11g0298 | 679232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch11g0298 | 203 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 15 | 185 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch11g0298 | 203 | FunFam | BHLH transcription factor | 125 | 188 | - | - | |
| Mch11g0298 | 203 | SMART | finulus | 128 | 177 | IPR011598 | GO:0046983(InterPro) | |
| Mch11g0298 | 203 | Pfam | Helix-loop-helix DNA-binding domain | 131 | 172 | IPR011598 | GO:0046983(InterPro) | |
| Mch11g0298 | 203 | MobiDBLite | consensus disorder prediction | 30 | 56 | - | - | |
| Mch11g0298 | 203 | MobiDBLite | consensus disorder prediction | 30 | 88 | - | - | |
| Mch11g0298 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 122 | 171 | IPR011598 | GO:0046983(InterPro) | |
| Mch11g0298 | 203 | Gene3D | - | 125 | 190 | IPR036638 | GO:0046983(InterPro) | |
| Mch11g0298 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 127 | 189 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0298 | Mch-Chr11:1879945 | Mch2g1357 | Mch-Chr2:9653342 | 9.65E-47 | dispersed | |
| Mch1g1221 | Mch-Chr1:14548687 | Mch11g0298 | Mch-Chr11:1879945 | 8.19E-06 | wgd | |
| Mch11g0298 | Mch-Chr11:1879945 | Mch8g0679 | Mch-Chr8:4848301 | 7.16E-55 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42552 | PF00010 | HLH | 1.20E-06 | No_clan | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch11g0298 | - | - | - | 0.0 |