Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0300 ATGGATGTCAGTAGTGAAAGAGAGAGAGAGAAAAAAAAGAAAGAGAGATGGACATGTCACGGCTCCCCAAAAAGACTGTTCCTTTCTCTTTCTCTTTCTCTTTCTCTGTGGCTGCTGCTTCATTCAGATTCAGCCATTGAAATGGCTCTAATGCTCGATAACTGCGAAGGGGTTCTACTGTCCCTAGACTCCCACAAGGCAATCCCCGCCCCATTCCTCACTAAAACTTACCAGCTCGTCGACGATCCCACCACTGACCACATCGTCTCATGGGGCGAAGACGACACCACTTTCGTCGTTTGGCGCCCTCCTGAATTCGCCAGAGATCTCCTCCCTAATTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTATGGTTTTAGAAAAATTGTGCCGGACAGGTGGGAGTTCGCCAACGAGTTCTTCAGGAAAGGAGAGAAACATTTATTATGCGAGATCCATAGACGGAAAACAGCTCAGCCGCCACAACTCACCGTCAACCAACACCACCACCATTCTCCACTCGGCATCAACGCTCCGAGTTACTACCACTTCCCCGGCCGACTCAGCATCTCGCCGTCCGAGTCAGACGACCAACCCAATTGGTGTGACTCGCCGCCGCTCTCCTCCCCGACAGGCGGTGGCAATAACAACAACAATAACAACAACAACTCAGTAACCGCGCTGTCGGAGGACAACGAGCGGCTGAGGCGGAGTAACAACATGCTGATGTCGGAACTCGCCCACATGAAAAAGCTCTACAACGACATCATCTATTTCGTTCAGAACCACGTCAAGCCCGTGGCTCCGAGCAACTCATACCAATACTCCACCACCTCATTACTCTCCGACGGCTTTCCGGCGCGGCCTCCTCCGAGCCACCTTCTCGGGTTCCACCCCACCAACCCAAAGCCGCCGGTTTCCGGTCACGCCCATTTTCCCACCGCTCCAAATAACAACAACGCCCCCTCCAGAAGCAGCTTCGTGACCATTCTCGACGAACCGCCGGCGGCGCCCACCTGCAAAACCAAGCTATTCGGGGTCCCGCTTCAATCGAAGAAAAGGCTGCACCCGGAATATAGTTCCAATTCTAATATTCAAATCGGCGGCAAAGACAACAACAAGGCTCGATTGGTGTTGGAGAAAGATGATTTAGGGCTCAATCTCATGCCTCCTTCCGCATGTTAG 1203 52.54 MDVSSEREREKKKKERWTCHGSPKRLFLSLSLSLSLWLLLHSDSAIEMALMLDNCEGVLLSLDSHKAIPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQPPQLTVNQHHHHSPLGINAPSYYHFPGRLSISPSESDDQPNWCDSPPLSSPTGGGNNNNNNNNNSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYQYSTTSLLSDGFPARPPPSHLLGFHPTNPKPPVSGHAHFPTAPNNNNAPSRSSFVTILDEPPAAPTCKTKLFGVPLQSKKRLHPEYSSNSNIQIGGKDNNKARLVLEKDDLGLNLMPPSAC 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1887096 1889128 - MC11g0239 Mch11g0300 679234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0300 400 FunFam Heat stress transcription factor B-4 64 162 - -
Mch11g0300 400 PRINTS Heat shock factor (HSF) domain signature 110 122 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0300 400 PRINTS Heat shock factor (HSF) domain signature 123 135 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0300 400 PRINTS Heat shock factor (HSF) domain signature 72 95 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0300 400 MobiDBLite consensus disorder prediction 193 238 - -
Mch11g0300 400 Coils Coil 231 251 - -
Mch11g0300 400 SMART hsfneu3 68 161 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0300 400 MobiDBLite consensus disorder prediction 197 235 - -
Mch11g0300 400 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 61 296 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Mch11g0300 400 ProSitePatterns HSF-type DNA-binding domain signature. 111 135 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0300 400 Gene3D - 64 163 IPR036388 -
Mch11g0300 400 Pfam HSF-type DNA-binding 72 161 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0300 400 SUPERFAMILY Winged helix DNA-binding domain 69 161 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0300 K09419 - - csv:101215518 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0300 Mch-Chr11:1887096 Mch1g1212 Mch-Chr1:14474820 3.49E-59 dispersed
Mch1g0401 Mch-Chr1:8175887 Mch11g0300 Mch-Chr11:1887096 6.18E-37 transposed
Mch6g1258 Mch-Chr6:10053290 Mch11g0300 Mch-Chr11:1887096 9.57E-69 transposed
Mch11g0300 Mch-Chr11:1887096 Mch8g0678 Mch-Chr8:4835537 2.19E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g752 Blo01g01525 . Bda01g00571 Bda03g00208 Bpe02g00432 Bpe04g00177 . Bma01g02269 Cmo05g00175 . Cma01g01832 Cma09g00239 Car01g01429 . Sed10g1244 Cpe06g00166 . Bhi04g00361 Tan02g1805 Cmetu03g2201 . Hepe08g1292 . Lcy13g2088 Cla08g01578 Cam08g2076 Cec08g1659 Cco08g1787 Clacu08g1762 . Cre08g1547 Cone4ag1583 Cone7ag1367 Cone17ag0846 Cone20ag0194 Lsi04g01548 Csa04g02421 . Cme03g02056 . . . . . Bpe05g00026 . . Sed01g2675 Cmo01g01891 Cmo09g00233 . Cma05g00178 Car05g00150 . Cpe11g00146 Cpe02g00187 Bhi09g03307 Tan01g4763 Cmetu07g0842 . Hepe01g1775 Mch11g0300 . Cla05g02052 Cam05g2203 Cec05g2220 Cco05g2263 Clacu05g2195 Cmu05g2061 Cre05g2189 Lsi08g01481 Csa02g01940 Chy07g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002351 3 2 1 1 3 2 2 1 2 2 2 2 3 2 2 3 2 2 3 1 2 2 2 2 2 2 2 3 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42553 PF00447 HSF_DNA-bind 4.50E-32 CL0123 Mch TF