Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0316 ATGGAAGGAGAAGTGTGCTCGGCTGTAAGTTCTTGTGGAACGGGGTCAGAGAAGCGGAAGCAAAGGCATCACGAGAGTAATCTACAGCAAGAAAAGCCGTACAGAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCCGAAATCAGAGAACCAAACAAGCGCTCCAGGATTTGGCTTGGCTCCTACACAACCCCCGTCGCAGCCGCCCGCGCCTACGACACCGCCGTCTTCTACCTCCGAGGCCCCACCGCCCGCCTCAACTTCCCGGAGTTGATGTTCGAAGAGGATCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGTGCTAGGGTTGACGCCATCCACATCTCTCACCTCCACGCCAGCTCAAACTCCAACTCCAATTCCTCCAATTCCGTGAAGCCTGATTTGAACGAGTATCCCAACCCCGAAACCTCAGATGACGATTAA 471 55.84 MEGEVCSAVSSCGTGSEKRKQRHHESNLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIHISHLHASSNSNSNSSNSVKPDLNEYPNPETSDDD 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1957501 1959286 - MC11g0242 Mch11g0316 679250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0316 156 MobiDBLite consensus disorder prediction 1 31 - -
Mch11g0316 156 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0316 156 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0316 156 MobiDBLite consensus disorder prediction 16 31 - -
Mch11g0316 156 CDD AP2 34 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0316 156 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0316 156 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0316 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 17 155 - -
Mch11g0316 156 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Mch11g0316 156 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677(InterPro)
Mch11g0316 156 SMART rav1_2 33 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0316 156 MobiDBLite consensus disorder prediction 127 156 - -
Mch11g0316 156 MobiDBLite consensus disorder prediction 127 146 - -
Mch11g0316 156 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0316 Mch-Chr11:1957501 Mch2g1317 Mch-Chr2:9346823 2.90E-27 dispersed
Mch1g1225 Mch-Chr1:14601933 Mch11g0316 Mch-Chr11:1957501 6.03E-47 wgd
Mch11g0316 Mch-Chr11:1957501 Mch8g0669 Mch-Chr8:4757508 1.20E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42555 PF00847 AP2 2.40E-11 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0316 K09286 - csv:101219005 240.35