Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0316 | ATGGAAGGAGAAGTGTGCTCGGCTGTAAGTTCTTGTGGAACGGGGTCAGAGAAGCGGAAGCAAAGGCATCACGAGAGTAATCTACAGCAAGAAAAGCCGTACAGAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCCGAAATCAGAGAACCAAACAAGCGCTCCAGGATTTGGCTTGGCTCCTACACAACCCCCGTCGCAGCCGCCCGCGCCTACGACACCGCCGTCTTCTACCTCCGAGGCCCCACCGCCCGCCTCAACTTCCCGGAGTTGATGTTCGAAGAGGATCAGCTTCACGACATGTCGGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGTGCTAGGGTTGACGCCATCCACATCTCTCACCTCCACGCCAGCTCAAACTCCAACTCCAATTCCTCCAATTCCGTGAAGCCTGATTTGAACGAGTATCCCAACCCCGAAACCTCAGATGACGATTAA | 471 | 55.84 | MEGEVCSAVSSCGTGSEKRKQRHHESNLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELMFEEDQLHDMSAASIRKRATEVGARVDAIHISHLHASSNSNSNSSNSVKPDLNEYPNPETSDDD | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1957501 | 1959286 | - | MC11g0242 | Mch11g0316 | 679250 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0316 | 156 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Mch11g0316 | 156 | PRINTS | Ethylene responsive element binding protein signature | 34 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0316 | 156 | PRINTS | Ethylene responsive element binding protein signature | 72 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0316 | 156 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
Mch11g0316 | 156 | CDD | AP2 | 34 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0316 | 156 | Gene3D | AP2/ERF domain | 33 | 91 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0316 | 156 | ProSiteProfiles | AP2/ERF domain profile. | 33 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0316 | 156 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 17 | 155 | - | - | |
Mch11g0316 | 156 | FunFam | Ethylene-responsive transcription factor 2 | 32 | 91 | - | - | |
Mch11g0316 | 156 | SUPERFAMILY | DNA-binding domain | 33 | 91 | IPR016177 | GO:0003677(InterPro) | |
Mch11g0316 | 156 | SMART | rav1_2 | 33 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0316 | 156 | MobiDBLite | consensus disorder prediction | 127 | 156 | - | - | |
Mch11g0316 | 156 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Mch11g0316 | 156 | Pfam | AP2 domain | 34 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0316 | Mch-Chr11:1957501 | Mch2g1317 | Mch-Chr2:9346823 | 2.90E-27 | dispersed | |
Mch1g1225 | Mch-Chr1:14601933 | Mch11g0316 | Mch-Chr11:1957501 | 6.03E-47 | wgd | |
Mch11g0316 | Mch-Chr11:1957501 | Mch8g0669 | Mch-Chr8:4757508 | 1.20E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42555 | PF00847 | AP2 | 2.40E-11 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0316 | K09286 | - | csv:101219005 | 240.35 |