Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0322 ATGGAAGCTGGGGAGGATTGTTGCGTCAAGGTCGCCGTCCACATCCGCCCGCTCATCGGCGACGAGCGGCTTCAGGGGTGTAAGGATTGCGTCACCGTCATCTCCGGGAAGCCTCAGGTACAAATTGGATCCCATTCATTTACATTTGATCATGTCTATGGAAGCACGGGTTCACCCTCATCGGCGATGTTTGAAGAATGTGTTTCTCCGCTTGTAGATGGTCTATTCCAAGGCTATAATGCTACTGTTCTAGCTTATGGCCAGACTGGATCTGGGAAAACTTATACCATGGGCACAGGTTTTAAGGATGGTTGTCAGACAACAGGAATCATCCCTCAAGTCATGAATATCCTGTTCGGCAAGATTGAAACTCTAAAGAATCAAATGGAATTTCAATTACATGTTTCCTTTATTGAGATTCTCAAGGAAGAGGTACGAGACCTGCTAGATCCTACTTCTTTTAGCAAAGTAGAGGGTGCAAATGGACATGCAGGGAAAGTAAATCTACCTGGGAAACCACCAATACAAATTCGTGAATCATCAAATGGTGTTATCACTCTAGCAGGATCCACTGAAGTTAGTGTAAACACACTGAAAGAGATGGCTTCTTGTCTGGAGCAAGGGTCACTGAGCAGGGCTACAGGAAGTACGAATATGAATAATCAGTCAAGTCGCTCACATGCCATCTTCACCATCACATTAGAGCAAATGCGTAAACTTAATCCAGCTTTTCCTGGAGAGGGACATATTGACAATATGAGTGAAGAGTATTTGTGTGCAAAGTTGCACTTGGTAGATCTAGCTGGGTCTGAACGAGCCAAGAGAACAGGTTCTGATGGTTTACGTTTCAAGGAAGGAGTTCATATAAATAAGGGTCTTCTTGCACTTGGTAACGTCATCAGTGCTCTTGGTGATGAGAAGAAGCGCAAAGAAGGGGTTCATGTTCCATATAGGGACAGTAAACTGACTCGACTCTTACAGGACTCTCTTGGTGGTAACAGCAGAACTGTTATGATAGCCTGCATCAGCCCCGCTGATATTAATGCCGAGGAAACTCTCAACACTTTGAAATATGCAAATCGAGCTCGTAATATCCAAAACAAGCCAGTTGTTAACAGGGATCCCATGTCCAATGAGATGCTAAAGATGCGACAACAACTAGAATATCTGCAGGCAGAACTTTTTGCACGTGGAGGGTCTTCATCCGATGAAGTTCAGGTTCTCAAGGAAAGGGTTGCCTGGCTTGAAGCAGCGAATCAGGATCTGTGTCGTGAGCTTCACGAATACCGTAGTAGATGCAGTATTGTGGAGCAATGTGAAACAGATGCCCAAGATGGTATAAATTGCTCTGTGAAAAGCGATGGACTTATAAATTGCTCTGTGAAAAGTGATAGGCTCAAAAGGGGCTTGCAAAGTATTGAATCACCTGATTTTCAAATGGGCGAAACCATGTCAGGGGATTCCCGTGAAATTGATGAAGAGGTGGCAAAAGAATGGGAGCATACACTTTTACAGAATAGCATGGACAAAGAATTACACGAACTAAATAAACGTCTAGAGCAGAAAGAGTCGGAAATGAAACTTTTTGGAGGATTTGACACAGCAGCTCTCAAGCAGCATTTTGGGAAGAAAATCGTGGAGCTGGAAGATGAGAAAAGAGCTGTCCAGCAAGAGAGGGATCGCTTGTTAACTGAAGTTGAAAACCTGGCTGCTTGTTCTGATGGTCAAACACAGAAATTACATGACATACATTCCCAAAAACTTAAAACCCTTGAGGCTCAGATTCTTGAACTTAAGAAGAAACAGGAAAACCAGGTTCAGCTACTAAAGCAAAAACAAAAAAGTGATGAAGCAGCAAGAAAATTGCAGGACGAGATTCAATTCATAAAGGCTCAGAAGGTTCAATTACAACAAAGGATGAAACAAGAGGCAGAACAATTTCGACAGTGGAAAGCATCTCGTGAAAAGGAGCTCCTACAGCTAAGAAAGGAGGGTAGGAGAAATGAATATGAAAGGCACAAACTGCAAGCTCTAAATCAGCGGCAGAAAATGGTTCTTCAAAGGAAAACAGAGGAGGCTGCAATGGCCACCAAGAGGCTAAAAGAACTACTTGAAGCTCGTAAATCTAATGGTCGTGAAAATTCAGGTATTACGAATGGAAATGGAATGAACGGGCAGAGCAATGAGAAATCTCTACAACGCTGGCTTGACCATGAGTTGGAAGTGATGGTGAACGTGCATGAAGTTCGTTTTGAATATGAAAAGCAAAGCCAAGTGCGAGCTGCACTGGCGGAAGAGTTATCCATCCTAAGGCAAGTGGATGAGTTTGCTGCAAAGGGCCTCAGCCCTCCAAGAGGAAAAAATGGTTTCGCTAGAGTTTCCTCCATGTCACCAACTGCAAGAATGGCCAGAATAACTTCACTTGAGAACATGCTAAGCATATCCTCAAATTCCCTTGTGGCGATGGCTTCACAACTTTCAGAGGCAGAGGAAAGGGAGCGTGCTTTCACCAACCGTGGACGTTGGAACCAGTTGCGCTCCATGGGAGATGCAAAGAATTTGCTTCAATACATGTTCAATTCTCTTGCAGATGCTCGGTGCCAACTATGGGAAAAAGAACTTGAAACTAGGGAAATGAAGGAGCAACTGAAAGAACTAGTTGGACTATTGCGGCAGAGTGAGACACGGAGAAAGGAAGTGGAGAAGGAGCTAAAATTGCGAGAGAAGGCTGTTGCGTTTGCATTGGCTACATCTGCAACGGTACATCATGAACATGAGAGCTCACCACCTTCATTGAAACACTTCGCTGATGAATTGAGTGGTCCCTTGTCCCCAATGTCAGTACCAGCACCGAAGCAACTCAAGTATACACCAGGAATTGCTAATGGCGCCGTTAGAGATTCTGCAGCATTCTTAGATCAGACACGAAAGATGGTACCAATTGGAAACTTGTCGATGAAGAAGTTTGCAACTGTGGGACAAGCTGGGAAACTATGGAGATGGAAGAGAAGTCATCATCAATGGCTGTTACAGTTTAAATGGAAATGGCAGAAACCATGGAGACTTTCAGAATGGATCAGACATAGTGACGAAACAATTATGAGATCAAGGCCTCGACCGCATGCTCTGCCTGCTGGGATGTGA 3144 44.12 MEAGEDCCVKVAVHIRPLIGDERLQGCKDCVTVISGKPQVQIGSHSFTFDHVYGSTGSPSSAMFEECVSPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQTTGIIPQVMNILFGKIETLKNQMEFQLHVSFIEILKEEVRDLLDPTSFSKVEGANGHAGKVNLPGKPPIQIRESSNGVITLAGSTEVSVNTLKEMASCLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNPAFPGEGHIDNMSEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVVNRDPMSNEMLKMRQQLEYLQAELFARGGSSSDEVQVLKERVAWLEAANQDLCRELHEYRSRCSIVEQCETDAQDGINCSVKSDGLINCSVKSDRLKRGLQSIESPDFQMGETMSGDSREIDEEVAKEWEHTLLQNSMDKELHELNKRLEQKESEMKLFGGFDTAALKQHFGKKIVELEDEKRAVQQERDRLLTEVENLAACSDGQTQKLHDIHSQKLKTLEAQILELKKKQENQVQLLKQKQKSDEAARKLQDEIQFIKAQKVQLQQRMKQEAEQFRQWKASREKELLQLRKEGRRNEYERHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKSNGRENSGITNGNGMNGQSNEKSLQRWLDHELEVMVNVHEVRFEYEKQSQVRAALAEELSILRQVDEFAAKGLSPPRGKNGFARVSSMSPTARMARITSLENMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGDAKNLLQYMFNSLADARCQLWEKELETREMKEQLKELVGLLRQSETRRKEVEKELKLREKAVAFALATSATVHHEHESSPPSLKHFADELSGPLSPMSVPAPKQLKYTPGIANGAVRDSAAFLDQTRKMVPIGNLSMKKFATVGQAGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRSRPRPHALPAGM 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1986942 1998129 + MC11g0247 Mch11g0322 679256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0322 1047 Gene3D Kinesin motor domain 2 393 IPR036961 -
Mch11g0322 1047 ProSiteProfiles Kinesin motor domain profile. 8 365 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g0322 1047 SMART kinesin_4 6 373 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g0322 1047 FunFam kinesin-like protein KIN-4A isoform X1 2 393 - -
Mch11g0322 1047 Coils Coil 581 653 - -
Mch11g0322 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 396 IPR027417 -
Mch11g0322 1047 Coils Coil 686 706 - -
Mch11g0322 1047 Coils Coil 505 525 - -
Mch11g0322 1047 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g0322 1047 PRINTS Kinesin heavy chain signature 261 279 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g0322 1047 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g0322 1047 PRINTS Kinesin heavy chain signature 315 336 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g0322 1047 Coils Coil 538 565 - -
Mch11g0322 1047 ProSitePatterns Kinesin motor domain signature. 260 271 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Mch11g0322 1047 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 950 1040 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005875(PANTHER)|GO:0007018(InterPro)|GO:0007052(PANTHER)|GO:0051231(PANTHER)
Mch11g0322 1047 Coils Coil 883 910 - -
Mch11g0322 1047 CDD KISc_KIF4 7 366 - -
Mch11g0322 1047 Pfam Kinesin motor domain 16 365 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0322 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0322 Mch-Chr11:1986942 Mch1g0748 Mch-Chr1:11296221 2.97E-63 dispersed
Mch11g0322 Mch-Chr11:1986942 Mch11g0708 Mch-Chr11:4666785 7.32E-291 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g731 Blo01g01519 . Bda01g00576 . Bpe02g00438 . . Bma01g02265 . . Cma01g01823 Cma09g00251 Car01g01425 . . Cpe06g00172 . . . . . . . . . . . . . . . Cone4ag1592 . . . Lsi04g01531 . . . Blo17g00895 . . . . . . . . Cmo01g01880 Cmo09g00243 . . . Car09g00208 . Cpe02g00191 Bhi09g03295 . . . . Mch11g0322 . Cla05g02066 Cam05g2217 Cec05g2236 Cco05g2277 Clacu05g2210 Cmu05g2076 Cre05g2202 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005992 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 0 2 2 38