Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0325 ATGGCTGTGGACCTTATGGTGGGCTTTGGGGATGCTGCTGCAGCTACTTCGCCCAACATGGAAGAGAATGCCGCTGTCTCTGCTGTTCAGGAAGCCGCTTCCGCTGGGATTCAGAGCGTCGAGAATTTCCTCAGATTGATGTCTAATTCCTCCACTTCCCCTCCCGATCCTCTCGCTGCCTATCAAGCCGTTGCAGATTCCGTCGTCAACAAGTTCAAGAAGGTCATTTCTCTGCTAGACCGGAACCGGACCGGCCACGCTCGCTTCCGGAGGGCTCCGCTTTCCACTTCCCCTCCTCCTCCGCCCAAGCTTCAAGATCCGGGTTCCTCGGTCCCCCAGATTCCAGCCAAGAAACACGAATCGGTCTCTGCTTTCAAGGTTTATTGCCCCACTCCCTCCCCTGTTGTGCGCTTGCCTCCTCTGCCTCATAATCCACCAAATACCTTCCAAACCCACCCCAATACTTCCTCGCTGCTCCTCAAAAACGGGTCCATGGACAGGAAGGACTCCACTACCACCATCAATTTCGCAGCATCGCCGCCCGTTTCTGCTGCTAATTCGTATATTTCATCATTAACTGGAGATACCGAAAGCTTACAGCCATCTCTCTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCATCCGCCGGAAAACCCCCTCTTTCATCCTCCTCCCTTAAGAGGAAATGCAATTCCATGGATGATTCCGCCGTCAAGTGTGGCTCGTCTTCCGGCCGGTGTCACTGTTCCAAGAAGAGGAAAAACAGGATAAAAAGAGAAATTAGAGTTCCGGCCGTTAGCGCCAAACTCGCCGACATCCCACCGGACGATTACTCATGGAGAAAGTATGGGCAGAAACCCATTAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTGTAGCAGTCTGAGAGGCTGCCCAGCGCGGAAACACGTAGAGCGGGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAATCACCTGCCGCTCTTGTTCTCGAATCATCATAG 1050 52.76 MAVDLMVGFGDAAAATSPNMEENAAVSAVQEAASAGIQSVENFLRLMSNSSTSPPDPLAAYQAVADSVVNKFKKVISLLDRNRTGHARFRRAPLSTSPPPPPKLQDPGSSVPQIPAKKHESVSAFKVYCPTPSPVVRLPPLPHNPPNTFQTHPNTSSLLLKNGSMDRKDSTTTINFAASPPVSAANSYISSLTGDTESLQPSLSSGFQFTHMSQVSSAGKPPLSSSSLKRKCNSMDDSAVKCGSSSGRCHCSKKRKNRIKREIRVPAVSAKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTESPAALVLESS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2005560 2008502 - MC11g0250 Mch11g0325 679259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0325 349 SUPERFAMILY WRKY DNA-binding domain 274 335 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0325 349 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0325 349 FunFam WRKY transcription factor 65 260 337 - -
Mch11g0325 349 MobiDBLite consensus disorder prediction 86 114 - -
Mch11g0325 349 Pfam Plant zinc cluster domain 229 274 IPR018872 -
Mch11g0325 349 Gene3D WRKY domain 262 337 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0325 349 Pfam WRKY DNA -binding domain 278 334 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0325 349 SMART WRKY_cls 276 336 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0325 349 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 26 338 IPR044810 GO:0003700(InterPro)
Mch11g0325 349 MobiDBLite consensus disorder prediction 94 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0325 Mch-Chr11:2005560 Mch6g2000 Mch-Chr6:22392784 9.74E-59 dispersed
Mch11g0630 Mch-Chr11:4053570 Mch11g0325 Mch-Chr11:2005560 2.22E-70 transposed
Mch6g0480 Mch-Chr6:3169097 Mch11g0325 Mch-Chr11:2005560 1.50E-65 transposed
Mch1g1230 Mch-Chr1:14640885 Mch11g0325 Mch-Chr11:2005560 6.49E-97 wgd
Mch11g0325 Mch-Chr11:2005560 Mch2g1266 Mch-Chr2:8784493 3.22E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42557 PF03106 WRKY 3.40E-25 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0325 - - - 0.0