Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0342 ATGGCGGATAAGGAGAATATATTTCGAGTCACTCGGGGTTCCAAGAGGAGAGCGGCGGAGGCTGCAACTCCCGACGACCGCTCAGCTAACAAGAGGAGAGTCGTGCTCGGAGAGCTCCCAATTTTACAGAATGCTAGTGCTTCGCTCGATCGCAAGTCCAAGTCGAAAACGAGCAGACAGCGACGGAGGGTGAAATCAAGGGATACACCAGGGACGAGTGCTGCAGCTGAAATCAACACGCTTCCCGAAGGTGACGTCAAGTTAGCAGACGATGGGGATTCCGACGACCCTCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAGTATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCGGATTACATTGGAAGGGTACAGAAGGATATAAGTCCCAATATGAGGGGAATTTTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTTATTTCAGACACTCTTTATCTCTCCATTTCATATGTTGACAGATACTTATCTCTAAACGCCATCAGCAGGCAAAAACTCCAATTGCTAGGTGTCTCTGCCATGCTTATTGCCTCAAAGTACGAAGAAATCAGTCCTCCACATGTCGAAGAATTTGTTTATATCACAGATAATACCTACAACAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAATCACTGGAATTCGAACTTGGCAATCCCACAATAAAGACATTCTTAAGGTTAGTGCAGTGGTCTATCTTTTACTGCCTGAGATTTACCATGATTGCTCAAGAGACTTATGAATATAATACTTTGCAATTTGAATTCTTGGGCTATTATCTTGCTGAGTTAAGCCTGATAGACTACAATTGTGTCAAATTCTTACCGTCTCTCACCGCTGCATCTGTTATCTTTCTAGCACGATTTATGATCCAACCGAAGAGGCATCCTTGGACTTCAAGGTTAGAGCACTGTACTGGATATAAGCCAGCTGATATGAAGGATTGCGTTCTTCTTATACATGATTTATATCTCAGCAGAAGAGGAGGTGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTACAAGTTTGTGTCTGTCATGCCTTCTCCTCCAGAGATTCCTGTTCCATATTTTGAAGATGTTAGAATATGA 1152 43.4 MADKENIFRVTRGSKRRAAEAATPDDRSANKRRVVLGELPILQNASASLDRKSKSKTSRQRRRVKSRDTPGTSAAAEINTLPEGDVKLADDGDSDDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISPNMRGILVDWLVEVAEEYKLISDTLYLSISYVDRYLSLNAISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRLVQWSIFYCLRFTMIAQETYEYNTLQFEFLGYYLAELSLIDYNCVKFLPSLTAASVIFLARFMIQPKRHPWTSRLEHCTGYKPADMKDCVLLIHDLYLSRRGGALAAIREKYKQHKYKFVSVMPSPPEIPVPYFEDVRI 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2119280 2122714 - MC11g0265 Mch11g0342 679276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0342 383 ProSitePatterns Cyclins signature. 139 170 IPR048258 -
Mch11g0342 383 MobiDBLite consensus disorder prediction 1 33 - -
Mch11g0342 383 FunFam Mitotic cyclin 6 122 222 - -
Mch11g0342 383 MobiDBLite consensus disorder prediction 1 75 - -
Mch11g0342 383 PIRSF Cyclin_A_B_D_E 3 375 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Mch11g0342 383 FunFam Cyclin A1 224 366 - -
Mch11g0342 383 SUPERFAMILY Cyclin-like 95 234 IPR036915 -
Mch11g0342 383 SUPERFAMILY Cyclin-like 253 372 IPR036915 -
Mch11g0342 383 PANTHER CYCLINS 86 358 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch11g0342 383 Pfam Cyclin, C-terminal domain 253 369 IPR004367 -
Mch11g0342 383 CDD CYCLIN_AtCycA-like_rpt2 237 361 - -
Mch11g0342 383 SMART Cyclin_C_2 237 370 IPR004367 -
Mch11g0342 383 Gene3D - 106 366 - -
Mch11g0342 383 Gene3D - 120 235 - -
Mch11g0342 383 Pfam Cyclin, N-terminal domain 106 234 IPR006671 -
Mch11g0342 383 SMART cyclin_7 144 228 IPR013763 -
Mch11g0342 383 SMART cyclin_7 255 339 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0342 Mch-Chr11:2119280 Mch4g1794 Mch-Chr4:20870820 2.63E-95 dispersed
Mch11g0342 Mch-Chr11:2119280 Mch4g0764 Mch-Chr4:5210337 1.58E-97 wgd
Mch11g0342 Mch-Chr11:2119280 Mch8g0655 Mch-Chr8:4687106 3.36E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0342 K06627 - csv:101207493 655.595