Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0349 TGGGAAATGGGCGGAGGCAATGGCCAGAAGGCTAGAATGGCTCGGGAGAGGAACATGGAGAAACAAAAGTCCTCCAGAGGAAGTCAGCTGGAAACAAACAAGAAAGCCATGACAATACAGTGCAAGGTATGCATGCAGACGTTTATATGTACAACTACAGAGGTGAAGTGCAGAGAACATGCAGAAGCAAGGCACCCGAAATCTGAATTATATGCCTGTTTTCCCCATCTTAAGAAA 237 45.99 WEMGGGNGQKARMARERNMEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSELYACFPHLKK 79
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2155330 2156010 + MC11g0272 Mch11g0349 679283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0349 79 MobiDBLite consensus disorder prediction 13 28 - -
Mch11g0349 79 Pfam Small EDRK-rich factor 1/2-like, N-terminal 5 37 IPR007513 -
Mch11g0349 79 SUPERFAMILY Expressed protein At2g23090/F21P24.15 2 78 - -
Mch11g0349 79 MobiDBLite consensus disorder prediction 1 32 - -
Mch11g0349 79 Gene3D - 1 79 IPR026939 -
Mch11g0349 79 Pfam Zinc-binding 40 77 IPR039438 -
Mch11g0349 79 PANTHER OS07G0114300 PROTEIN 3 79 IPR039713 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0349 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1269 Mch-Chr1:14891110 Mch11g0349 Mch-Chr11:2155330 2.71E-46 wgd
Mch10g0456 Mch-Chr10:2978457 Mch11g0349 Mch-Chr11:2155330 5.91E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g669 . . . . . . . . . . . Cma09g00277 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g02464 . . Blo17g00866 Blo18g00715 . Bda01g01593 Bpe02g01780 Bpe05g00039 Bma01g00674 Bma05g00051 Sed13g1796 . Cmo09g00272 . . . Car09g00233 . . Bhi09g03246 Tan01g4713 Cmetu07g1941 . . Mch11g0349 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001418 2 3 2 2 2 2 1 3 2 1 2 2 2 3 3 4 2 2 2 1 3 2 2 1 3 2 3 3 3 2 67