Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0357 ATGGCTTTGGAAGCTCTAAATTCTCCCACTACTCCGTCGCCGGCTCTCCACTACGACGACCCGAGCCTGAATTCGTTAGAGTCGTGGTCCAAGCGGAAGAGGACCAAGCGTCCACGGGGGTTCGACAACCCACCCACAGAGGAAGAGTACTTGGCGCTATGTCTCATCATGCTGGCTCGTGGCGGCGGAGCTGACCCTGGCTATGAAGTTCCGATTCCGGCTCAGCCCATATCGGTCGTTAAGCTTAGCTACAAGTGCTCTGTCTGCGACAAGGCGTTTTCGTCTTACCAGGCCTTGGGTGGCCACAAAGCCAGCCATAGGAAATCAGCTACAGGGGAAGACCAGTCAACTTCCTCCACAACCACCACTTCCGCCACCGCCACCGCCGCCGTCGGTGGGGGAAAATCCCACCAGTGTTCTATTTGCCACAAATCGTTTCCGACCGGCCAGGCGTTGGGCGGTCACAAACGCTGCCACTACGACGGCGGAATCGGCAACAACAACAGCAATAACCACAACAACAGCAGCAACCACAACCACGCCGTGACATCATCGGAGAGCCACACGCAGAGCCACCGCGACTTCGACCTCAACCTCCCGGCCTTACCGGAACTGTCACCGGAGTTCTTAGTCTCCGCCGGCGACGACGAGGTCCAAAGCCCATTACCCCTCAAGAAGCCTCGCATACTGACGATTCCCAAAATCGAAATTTCTCAAAAT 720 56.81 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGGADPGYEVPIPAQPISVVKLSYKCSVCDKAFSSYQALGGHKASHRKSATGEDQSTSSTTTTSATATAAVGGGKSHQCSICHKSFPTGQALGGHKRCHYDGGIGNNNSNNHNNSSNHNHAVTSSESHTQSHRDFDLNLPALPELSPEFLVSAGDDEVQSPLPLKKPRILTIPKIEISQN 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2192559 2193278 - MC11g0280 Mch11g0357 679291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0357 240 MobiDBLite consensus disorder prediction 101 135 - -
Mch11g0357 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Mch11g0357 240 MobiDBLite consensus disorder prediction 1 44 - -
Mch11g0357 240 MobiDBLite consensus disorder prediction 165 186 - -
Mch11g0357 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Mch11g0357 240 MobiDBLite consensus disorder prediction 111 133 - -
Mch11g0357 240 Pfam C2H2-type zinc finger 137 161 IPR013087 -
Mch11g0357 240 Pfam C2H2-type zinc finger 84 109 IPR013087 -
Mch11g0357 240 Gene3D Classic Zinc Finger 82 159 - -
Mch11g0357 240 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Mch11g0357 240 SUPERFAMILY beta-beta-alpha zinc fingers 84 159 IPR036236 -
Mch11g0357 240 MobiDBLite consensus disorder prediction 1 18 - -
Mch11g0357 240 MobiDBLite consensus disorder prediction 165 200 - -
Mch11g0357 240 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 204 IPR044653 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Mch11g0357 240 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Mch11g0357 240 SMART c2h2final6 84 106 IPR013087 -
Mch11g0357 240 SMART c2h2final6 137 159 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0357 Mch-Chr11:2192559 Mch4g0405 Mch-Chr4:2590904 1.67E-17 dispersed
Mch6g2480 Mch-Chr6:26704393 Mch11g0357 Mch-Chr11:2192559 3.69E-08 transposed
Mch8g0639 Mch-Chr8:4599302 Mch11g0357 Mch-Chr11:2192559 7.11E-67 transposed
Mch11g0357 Mch-Chr11:2192559 Mch4g0776 Mch-Chr4:5328520 5.09E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42560 PF13912 zf-C2H2_6 1.80E-11 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0357 - - - 0.0