Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0358 ATGGATTGTTTTGGGGAATGGGATTTTTGCAGCTCCATTTTATCACTGGAAGAGCTTGATTTTGCGCCATTTAATAATAGTCCTCCCGCCGGGGCCGATGCTTGGTTTTGTTCTTTGGATTACGCCAATAATTTTGTGGATCAAATTCCTTGTTGTATTGCTGCTGATGATCACTCCATAGCCAGTGGTGGCATTGCCATGGAAGAGATGAAGAATATGGAGTCCATTTTAGTGCAAGAGATGACTGGTTTTTGTGGCCATGATGAACATAGCATTCTCCCAAATCAACTGTTGCACCAAAAAAGGAAATCAAATCTCCCTGCTGATGATGATCACAACAATCTCCACGTCCCCAAAAAGAAGATTCGAACTTCAAACAATGTACAGAAAACTAGGAAGCCAAATGTGAAGACGATGCAGAAGTTGGGGAGTCGCGGGCGGAAATGCGAAGAAGAAGAGGAAAATGGAGTGTCTGATCATATGAACAGTTACAGCAGTGAAAACTCATCAGAGGATGAAAATGCTTCACAGGAATTAACTAATGGAGGCCATGATCGGGCCGAGGCCGAGCCCCCAAAAGCCAAGACCAGAGCCTCTAGAGGCTCGGCAACTGATCCACAGAGTCTTTACGCAAGGAAGAGAAGGGAGAGGATCAACGAGCGGCTCAGAATCCTGCAGAAACTTGTCCCAAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTATGTGAAATTTCTGCAGCTCCAAATAAAGCTTTTGAGCTCTGATGAGTTGTGGATGTATGCTCCAATCGCTTACAATGGGATGGATATTGGTCTCCAGCAGAGGCTTTCTTCATTTTTATGA 861 44.25 MDCFGEWDFCSSILSLEELDFAPFNNSPPAGADAWFCSLDYANNFVDQIPCCIAADDHSIASGGIAMEEMKNMESILVQEMTGFCGHDEHSILPNQLLHQKRKSNLPADDDHNNLHVPKKKIRTSNNVQKTRKPNVKTMQKLGSRGRKCEEEEENGVSDHMNSYSSENSSEDENASQELTNGGHDRAEAEPPKAKTRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQRLSSFL 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2200117 2202292 + MC11g0281 Mch11g0358 679292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0358 286 MobiDBLite consensus disorder prediction 104 214 - -
Mch11g0358 286 MobiDBLite consensus disorder prediction 104 118 - -
Mch11g0358 286 CDD bHLH_AtIND_like 203 265 - -
Mch11g0358 286 MobiDBLite consensus disorder prediction 120 138 - -
Mch11g0358 286 MobiDBLite consensus disorder prediction 143 158 - -
Mch11g0358 286 Gene3D - 204 260 IPR036638 GO:0046983(InterPro)
Mch11g0358 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 102 274 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch11g0358 286 Pfam Helix-loop-helix DNA-binding domain 212 252 IPR011598 GO:0046983(InterPro)
Mch11g0358 286 MobiDBLite consensus disorder prediction 159 181 - -
Mch11g0358 286 FunFam Basic helix-loop-helix transcription factor 203 260 - -
Mch11g0358 286 SMART finulus 208 257 IPR011598 GO:0046983(InterPro)
Mch11g0358 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983(InterPro)
Mch11g0358 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 268 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0358 Mch-Chr11:2200117 Mch4g1691 Mch-Chr4:20075627 4.90E-22 dispersed
Mch10g0448 Mch-Chr10:2938142 Mch11g0358 Mch-Chr11:2200117 4.61E-28 wgd
Mch11g0358 Mch-Chr11:2200117 Mch4g0781 Mch-Chr4:5370536 3.78E-49 wgd
Mch11g0358 Mch-Chr11:2200117 Mch6g0195 Mch-Chr6:1306086 8.06E-10 wgd
Mch11g0358 Mch-Chr11:2200117 Mch8g0636 Mch-Chr8:4576611 9.06E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42561 PF00010 HLH 8.00E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0358 - - - 0.0