Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0376 GGGTTTGCGAAAATGCCGATGTACCAGCCGTCCGGTCGGCGAAGGGAAGCCGATTCGGAGCTGGGTGTGGGTGGTGGTGGGCAAGTTCTCGATGTGGAGACCGCCGTGAAGGACGGTATTCTGGGCGGCGGGGGTGGGTTAATCTGCGACGGCGGAGGGGCTGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTGGAGAATTTGGAGGTTCCATCCGTGTTTATTTGCCCAATTTCATTGGAGCCAATGAGAGATCCTGTTACCCTTTGTACTGGCCAGACCTACGAACGAGCCAACATCCTCAAATGGTTCTCTCTCGGCCATTTTACTTGCCCCACCACAATGCAGGAGCTTTGGGATGATTCAATCACCCCCAATAACACCCTTCACCAACTGATTTACAGTTGGTTTTCGCAGAAGTATTTGGCAATGAAGAAGCGGTCGGAGGATGTTCAGGGCAGGGCTCTTGAGCTCTTGGACACATTGAAAAAAGTCAAGGGTCAGGCACGTATCCGAGCTTTGAAGGAGCTCCGGCAAGTCGTGGCCTCGAATTCTTCAGCAAAGAAGACAGTGGAAGACAATGGTGGTCTCGCTTCAATTTCATCCTTGTTGGGTCCTTTCACGTCCCATGCAGTTGGGTCGGAAGCCATTGGGATTTTGGTTAACTTGGTTCTCGATTCTGAGTCGAGGAGAAACCTTGTTCAACCTGCAAAGGTTTCGTTAATGGTGGACATGTTGAATGAAGGATCCACAGAGACCAAAATCAACTGCACCAGATTGATTGAGACTTTGCTGGAAGGGGACGATTGCGGAGCAGAAAACATCTCGAGTTTGAGCCTTTTGGTTGGATTATTGAGACTAATCAAGGAAAAGAAACACCCAAATGGTGTTCTTGCTGGATTAAGATTGCTAAAATCTCTTTGCTCCCAAGAACCAGTGTGGAACTCAGTAGTGAGCATAGGGGCAATACCACAATTGATTGAAATTCTGCCGAATTTTGACCCCGAATGTTTGGAACTAGCCCTTCATGTATTGGACTCACTATCATCCCTCTCAGAGGGCAGGGTGGCCTTAAAAGATTGCCCCAACACCATTCCCAACTTAGTGAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTAGCTCTATCAATCTTATGGGCAGTTTGTAAACTCGCCCCTGAAGAATGTGCAGCACAAGCAGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTTTGGTGATCCAGAGCGGTTGCAATCCCGTTCTGAAACAGCGCTGCTCCGAGCTTCTGAAACTCTGCAGCTTGAATTACACAGCGACGCACTTCATTTCCAAGTGTAAGCTCACAAGGACAATACAA 1365 48.79 GFAKMPMYQPSGRRREADSELGVGGGGQVLDVETAVKDGILGGGGGLICDGGGAEKLDLKEMVEELENLEVPSVFICPISLEPMRDPVTLCTGQTYERANILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARIRALKELRQVVASNSSAKKTVEDNGGLASISSLLGPFTSHAVGSEAIGILVNLVLDSESRRNLVQPAKVSLMVDMLNEGSTETKINCTRLIETLLEGDDCGAENISSLSLLVGLLRLIKEKKHPNGVLAGLRLLKSLCSQEPVWNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECAAQAVEAGLAAKLLLVIQSGCNPVLKQRCSELLKLCSLNYTATHFISKCKLTRTIQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2352256 2353620 + MC11g0297 Mch11g0376 679310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0376 455 CDD RING-Ubox_PUB 72 122 IPR045210 -
Mch11g0376 455 SUPERFAMILY RING/U-box 65 141 - -
Mch11g0376 455 PANTHER WDSAM1 PROTEIN 68 450 IPR045185 GO:0061630(InterPro)
Mch11g0376 455 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0376 455 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0376 455 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0376 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 151 IPR013083 -
Mch11g0376 455 Gene3D - 152 433 IPR011989 -
Mch11g0376 455 SUPERFAMILY ARM repeat 241 438 IPR016024 -
Mch11g0376 455 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0376 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0376 Mch-Chr11:2352256 Mch2g1573 Mch-Chr2:12536617 7.41E-29 dispersed
Mch6g0824 Mch-Chr6:5704302 Mch11g0376 Mch-Chr11:2352256 1.31E-13 transposed
Mch11g0376 Mch-Chr11:2352256 Mch8g0620 Mch-Chr8:4451264 2.42E-203 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g622 . . . . . . . . Cmo05g00134 Cmo12g00545 Cma01g01775 Cma09g00301 Car01g01385 Car12g00549 Sed11g0913 Cpe06g00211 Cpe07g00525 Bhi04g00447 Tan02g1715 Cmetu03g2084 . Hepe08g1345 . Lcy13g2147 Cla08g01635 Cam08g2137 Cec08g1725 Cco08g1844 Clacu08g1825 . Cre08g1608 . . . . Lsi04g01467 Csa04g02494 . Cme03g02117 . . . . . . . . Sed01g2733 Cmo01g01834 Cmo09g00300 Cma12g00605 Cma05g00129 Car05g00111 Car09g00253 Cpe11g00111 Cpe02g00230 Bhi09g03207 Tan01g4675 Cmetu07g0012 . Hepe01g1842 Mch11g0376 . . . . . . . . Lsi08g01540 Csa02g01879 Chy07g00203 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001278 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 2 1 74