Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0376 GGGTTTGCGAAAATGCCGATGTACCAGCCGTCCGGTCGGCGAAGGGAAGCCGATTCGGAGCTGGGTGTGGGTGGTGGTGGGCAAGTTCTCGATGTGGAGACCGCCGTGAAGGACGGTATTCTGGGCGGCGGGGGTGGGTTAATCTGCGACGGCGGAGGGGCTGAGAAATTGGATCTGAAGGAGATGGTGGAGGAGCTGGAGAATTTGGAGGTTCCATCCGTGTTTATTTGCCCAATTTCATTGGAGCCAATGAGAGATCCTGTTACCCTTTGTACTGGCCAGACCTACGAACGAGCCAACATCCTCAAATGGTTCTCTCTCGGCCATTTTACTTGCCCCACCACAATGCAGGAGCTTTGGGATGATTCAATCACCCCCAATAACACCCTTCACCAACTGATTTACAGTTGGTTTTCGCAGAAGTATTTGGCAATGAAGAAGCGGTCGGAGGATGTTCAGGGCAGGGCTCTTGAGCTCTTGGACACATTGAAAAAAGTCAAGGGTCAGGCACGTATCCGAGCTTTGAAGGAGCTCCGGCAAGTCGTGGCCTCGAATTCTTCAGCAAAGAAGACAGTGGAAGACAATGGTGGTCTCGCTTCAATTTCATCCTTGTTGGGTCCTTTCACGTCCCATGCAGTTGGGTCGGAAGCCATTGGGATTTTGGTTAACTTGGTTCTCGATTCTGAGTCGAGGAGAAACCTTGTTCAACCTGCAAAGGTTTCGTTAATGGTGGACATGTTGAATGAAGGATCCACAGAGACCAAAATCAACTGCACCAGATTGATTGAGACTTTGCTGGAAGGGGACGATTGCGGAGCAGAAAACATCTCGAGTTTGAGCCTTTTGGTTGGATTATTGAGACTAATCAAGGAAAAGAAACACCCAAATGGTGTTCTTGCTGGATTAAGATTGCTAAAATCTCTTTGCTCCCAAGAACCAGTGTGGAACTCAGTAGTGAGCATAGGGGCAATACCACAATTGATTGAAATTCTGCCGAATTTTGACCCCGAATGTTTGGAACTAGCCCTTCATGTATTGGACTCACTATCATCCCTCTCAGAGGGCAGGGTGGCCTTAAAAGATTGCCCCAACACCATTCCCAACTTAGTGAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTAGCTCTATCAATCTTATGGGCAGTTTGTAAACTCGCCCCTGAAGAATGTGCAGCACAAGCAGTGGAAGCAGGCTTAGCAGCCAAGCTTCTTTTGGTGATCCAGAGCGGTTGCAATCCCGTTCTGAAACAGCGCTGCTCCGAGCTTCTGAAACTCTGCAGCTTGAATTACACAGCGACGCACTTCATTTCCAAGTGTAAGCTCACAAGGACAATACAA 1365 48.79 GFAKMPMYQPSGRRREADSELGVGGGGQVLDVETAVKDGILGGGGGLICDGGGAEKLDLKEMVEELENLEVPSVFICPISLEPMRDPVTLCTGQTYERANILKWFSLGHFTCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARIRALKELRQVVASNSSAKKTVEDNGGLASISSLLGPFTSHAVGSEAIGILVNLVLDSESRRNLVQPAKVSLMVDMLNEGSTETKINCTRLIETLLEGDDCGAENISSLSLLVGLLRLIKEKKHPNGVLAGLRLLKSLCSQEPVWNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPNTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECAAQAVEAGLAAKLLLVIQSGCNPVLKQRCSELLKLCSLNYTATHFISKCKLTRTIQ 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2352256 2353620 + MC11g0297 Mch11g0376 679310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0376 455 CDD RING-Ubox_PUB 72 122 IPR045210 -
Mch11g0376 455 SUPERFAMILY RING/U-box 65 141 - -
Mch11g0376 455 PANTHER WDSAM1 PROTEIN 68 450 IPR045185 GO:0061630(InterPro)
Mch11g0376 455 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0376 455 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0376 455 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0376 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 151 IPR013083 -
Mch11g0376 455 Gene3D - 152 433 IPR011989 -
Mch11g0376 455 SUPERFAMILY ARM repeat 241 438 IPR016024 -
Mch11g0376 455 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0376 Mch-Chr11:2352256 Mch2g1573 Mch-Chr2:12536617 7.41E-29 dispersed
Mch6g0824 Mch-Chr6:5704302 Mch11g0376 Mch-Chr11:2352256 1.31E-13 transposed
Mch11g0376 Mch-Chr11:2352256 Mch8g0620 Mch-Chr8:4451264 2.42E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0376 - - - 0.0