Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0381 ATGGAAAACCTGTCTCAGTCCTCAGGTGGACAGTTTCGACCGATTATCCCAGCACAGCCAGGCCAGACATTCATTTCTTCCGCTGCTCAACAGTTTCAGTTAGCAGGGCAGAATATATCTTCTTCAAATGTTGGAGTGCCAACTGGTCAAGTCCAGCCACATCAGTATCATCAATCAATGCAGCAGTTAGTGTCAAGACCAAGTCATCCTAGCTATGTAACTCCTTCGTCCCAGCCTATACAAATGCCGTATGCTCAGACAAGGCCTCTTACTTCTGTTCCACCTCAGTCTCACCAAAGTGTGGCTGCACCAAATAATCATATGCATGGCATGGGTGCTCATGGACTACCTCTTTCTTCACCATATACTTTCCAGCCAATGTCACAAGTGCATGCACCCGTTGGAGTTGGTAATAGCCAACCTTGGTTGTCTTCTGTGAATCAGACTACGAACCTCGTCTCACCGGTCGAGCAAGCTAACCAGCATTCTTCAGTTTCTGCCATAAATCCAGCTGCTAATGTTCCTGTCTTCAATCAGCAGTCTTCATCTGATTGGCAGGAGCATGCATCAGCTGATGGGAGAAGATATTATTACAACAAAAAAACAAAACAGTCCAGTTGGGAGAAACCATTGGAACTTATGACACCACTTGAGAGGGCTGATGCATCAACTGTGTGGAAGGAATTTACAGCCCCGGATGGAAGAAAGTATTATTACAATAAGGTGACGAAAGAATCAAAGTGGACCATGCCAGAAGAACTAAAGTTGGCTCGTGAGCAGGCTCAGAAGGAAGCTGTCCATGGAACACAAACAGATATAGCTGTGACAACACCTCAACCTCCGCCTGCTGTTGGTCTTTCCCATGCTGAAACACCAGCAGTTCCTTCCATCAACTCCAGCATTTCTCCAATGGTATCTGGGGTTGCATCAAGTCCAGTTCCAGTCACTCCTTTTGTTTCTGTATCTAGTTCTCCTTCGGTGGCGGTTTCTGGATCACTGGCCGTTACTGGCACACCCATTGCTGCAACAACTTCTGTGACTGGAGTACAGTCTTCTGTCATGACAGTTGCTTCTCAATCTGTTGCTGCTTCTGGAGGTACTGGTCCTCCTGCTGTGGTCCATGCCAATGCTTCGTCAGTGACTGGTTTAGAAAGCCTTGCATCTCAAGATGTCAAAAATCCTGTTGATGGAACATCTTCGGAGGACATTGAGGAAGCAAGAAAGGGAATGGCAGTTGCAGGAAAAGTTAACGAGACTGTTTTGGAGGAGAGATCTGCTGACGATGAACCGTTGGTATTTGCCAACAAGCTGGAGGCCAAGAATGCATTTAAAGCGCTTCTGGAATCTGTAAATGTGCAATCTGATTGGACGTGGGAGCAGGCTATGCGAGAAATAATCAATGACAAAAGATATGGCGCCTTGAAAACTCTTGGTGAGCGCAAGCAAGCATTCCATGAGTATTTAGGACATAGGAAAAAATTGGATGCAGAAGAAAGACGCGTAAGACAGAAAAAAGCTCGTGAGGAGTTCACTAAGATGTTGGAAGAGTCCAAGGAACTCGCATCATCTACCAGATGGAGCAAAGCTGTTAGTATGTTTGAGAACGACGAACGGTTCAAAGCTGTTGAACGTGCTAGAGATCGAGAGGATCTTTTTGAAAGCTACATAGTGGAACTTGAGAGGAAGGAAAAAGAAAAGGCTGCAGAGGAATACAAGAAAAATATTGCTGAATACAGGAAATTTCTTGAGTCATGCGACTACATAAAGGTGAGCAGCCAGTGGCGGAAAGTACAAGATCGGTTGGAAGACGACGAAAGATGCTCACGTCTTGAGAAACTTGATCGCTTGCTTATTTTCCAGGCATGTTTTTCATTTGACTATATTCGTGACTTGGAAAAGGAGGAAGACGAACAGAAGAAGATACAAAAGGAACGTGTGCGAAGAATTGAACGAAAAAACCGTGACGAGTTTCGCAAACTCATGGAAGAACACATTTCTGTGGGTGTTCTTACAGCTAAAACTTTCTGGCGTGATTATTGTTTGAAGGTTAAGGAGTTGCCTCAGTACCAAGCTGTTGCTTCAAATATATCTGGTTCGACACCAAAGGACTTGTTTGAGGATGTTCTTGAGGAATTAGAGAATAAGTATCATGAAGAAAAAGCCCAGATAAAAGATGTGATGAAGGCAGCGAAGATTACCATCACTTCATCATGGACATTTGATGACTTTAAGGCTGCCATTGAAGAGGGTGGTTCTCTTACCGTATCAGATATAAATTTTAAGCTTGTATATGAGGACTTACTAGATAGAGCCAAAGAGAAGGAGGAGAAAGAAGCCAAAAGGCGTCAACGTCTGGCTGATGACTTCTCAAGACTGCTACAGTCATTCAAGGAGATATCAACTTCTTCCAACTGGGAGGATAGCAAACAACTTTTTGAAGAGAGTGAAGAGTACAGATCAATTGGGGAAGAAAGTTTTGCGAGGGAAGTTTTTGAGGAATACATCATGCATTTACAAGAAAAGGCAAAAGAAAAGGAACGCAAGCGTGAGGAGGAGAAGGCTAAAAAGGAAAAAGAACGGGAGGAAAAGGAGAAGCGGAAGGAGAAAGAGCGAAAGGATAAGGAGAGAGAACGTGAAAAAGAAAAGGGCCGGATTAAGAAGGATGAATCAGATAGTGAAAATGTAGATGCAAGCGAAACTCATGGCTACAGAGAAGATAAGAAAAGAGAAAAAGAGAAAGATAGGAAGCACCGGAAGCGGCATCATAGTGCCACTGATGATGGTGGTTCTGGTAAAGATGAGAGAGAGGAGTCTAAGAAGTCACGCAAACATAGTAGCGACCGAAAAAAATCAAGGAAGGCACAACAGAAATTAAATCTCATGTATTTTTCTTTGCAGCACGCATATTCACCTGAATCAGACAGTGAGAGTAGGCACAGAAGGCACAAGAGAGATCATCGAGATGGTTCCCGTAGAAATGGTGGACATGATGAACTTGAAGATGGGGAGCTTGGTGAAGATGGAGAAATTCAA 3033 43.85 MENLSQSSGGQFRPIIPAQPGQTFISSAAQQFQLAGQNISSSNVGVPTGQVQPHQYHQSMQQLVSRPSHPSYVTPSSQPIQMPYAQTRPLTSVPPQSHQSVAAPNNHMHGMGAHGLPLSSPYTFQPMSQVHAPVGVGNSQPWLSSVNQTTNLVSPVEQANQHSSVSAINPAANVPVFNQQSSSDWQEHASADGRRYYYNKKTKQSSWEKPLELMTPLERADASTVWKEFTAPDGRKYYYNKVTKESKWTMPEELKLAREQAQKEAVHGTQTDIAVTTPQPPPAVGLSHAETPAVPSINSSISPMVSGVASSPVPVTPFVSVSSSPSVAVSGSLAVTGTPIAATTSVTGVQSSVMTVASQSVAASGGTGPPAVVHANASSVTGLESLASQDVKNPVDGTSSEDIEEARKGMAVAGKVNETVLEERSADDEPLVFANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYGALKTLGERKQAFHEYLGHRKKLDAEERRVRQKKAREEFTKMLEESKELASSTRWSKAVSMFENDERFKAVERARDREDLFESYIVELERKEKEKAAEEYKKNIAEYRKFLESCDYIKVSSQWRKVQDRLEDDERCSRLEKLDRLLIFQACFSFDYIRDLEKEEDEQKKIQKERVRRIERKNRDEFRKLMEEHISVGVLTAKTFWRDYCLKVKELPQYQAVASNISGSTPKDLFEDVLEELENKYHEEKAQIKDVMKAAKITITSSWTFDDFKAAIEEGGSLTVSDINFKLVYEDLLDRAKEKEEKEAKRRQRLADDFSRLLQSFKEISTSSNWEDSKQLFEESEEYRSIGEESFAREVFEEYIMHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKDKEREREKEKGRIKKDESDSENVDASETHGYREDKKREKEKDRKHRKRHHSATDDGGSGKDEREESKKSRKHSSDRKKSRKAQQKLNLMYFSLQHAYSPESDSESRHRRHKRDHRDGSRRNGGHDELEDGELGEDGEIQ 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2381181 2394903 - MC11g0302 Mch11g0381 679315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0381 1011 Coils Coil 828 891 - -
Mch11g0381 1011 ProSiteProfiles FF domain profile. 436 490 IPR002713 -
Mch11g0381 1011 Coils Coil 561 581 - -
Mch11g0381 1011 Coils Coil 764 788 - -
Mch11g0381 1011 ProSiteProfiles WW/rsp5/WWP domain profile. 179 212 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 Gene3D FF domain 567 639 IPR036517 -
Mch11g0381 1011 Gene3D FF domain 492 566 IPR036517 -
Mch11g0381 1011 Gene3D FF domain 640 723 IPR036517 -
Mch11g0381 1011 ProSiteProfiles FF domain profile. 648 711 IPR002713 -
Mch11g0381 1011 SUPERFAMILY WW domain 213 254 IPR036020 GO:0005515(InterPro)
Mch11g0381 1011 ProSiteProfiles FF domain profile. 503 558 IPR002713 -
Mch11g0381 1011 SUPERFAMILY FF domain 497 565 IPR036517 -
Mch11g0381 1011 SUPERFAMILY FF domain 563 637 IPR036517 -
Mch11g0381 1011 Gene3D FF domain 436 491 IPR036517 -
Mch11g0381 1011 FunFam pre-mRNA-processing protein 40A isoform X1 435 490 - -
Mch11g0381 1011 Gene3D - 222 266 - -
Mch11g0381 1011 Gene3D - 178 221 - -
Mch11g0381 1011 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 179 816 IPR039726 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005685(PANTHER)|GO:0045292(InterPro)|GO:0071004(PANTHER)
Mch11g0381 1011 MobiDBLite consensus disorder prediction 841 1011 - -
Mch11g0381 1011 FunFam Pre-mRNA-processing protein 40A 641 722 - -
Mch11g0381 1011 MobiDBLite consensus disorder prediction 921 943 - -
Mch11g0381 1011 FunFam Pre-mRNA-processing protein 40A 492 565 - -
Mch11g0381 1011 SMART ww_5 221 253 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 SMART ww_5 180 212 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 MobiDBLite consensus disorder prediction 841 912 - -
Mch11g0381 1011 Pfam FF domain 787 834 IPR002713 -
Mch11g0381 1011 Pfam FF domain 505 555 IPR002713 -
Mch11g0381 1011 Pfam FF domain 652 707 IPR002713 -
Mch11g0381 1011 Pfam FF domain 438 487 IPR002713 -
Mch11g0381 1011 SUPERFAMILY FF domain 643 718 IPR036517 -
Mch11g0381 1011 ProSitePatterns WW/rsp5/WWP domain signature. 185 210 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 SMART FF_2 503 558 IPR002713 -
Mch11g0381 1011 SMART FF_2 650 711 IPR002713 -
Mch11g0381 1011 SMART FF_2 571 630 IPR002713 -
Mch11g0381 1011 SMART FF_2 782 837 IPR002713 -
Mch11g0381 1011 SMART FF_2 436 490 IPR002713 -
Mch11g0381 1011 SUPERFAMILY FF domain 783 844 IPR036517 -
Mch11g0381 1011 Pfam WW domain 183 210 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 Pfam WW domain 226 251 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 Coils Coil 632 652 - -
Mch11g0381 1011 ProSiteProfiles FF domain profile. 571 625 IPR002713 -
Mch11g0381 1011 CDD WW 183 212 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 Coils Coil 702 729 - -
Mch11g0381 1011 Gene3D FF domain 775 850 IPR036517 -
Mch11g0381 1011 MobiDBLite consensus disorder prediction 957 971 - -
Mch11g0381 1011 ProSiteProfiles FF domain profile. 782 837 IPR002713 -
Mch11g0381 1011 SUPERFAMILY FF domain 428 489 IPR036517 -
Mch11g0381 1011 CDD WW 226 253 IPR001202 GO:0005515(InterPro)
Mch11g0381 1011 FunFam Pre-mRNA-processing protein 40A 776 849 - -
Mch11g0381 1011 SUPERFAMILY WW domain 184 218 IPR036020 GO:0005515(InterPro)
Mch11g0381 1011 ProSiteProfiles WW/rsp5/WWP domain profile. 220 253 IPR001202 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0381 K12821 - - csv:101203479 1508.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0411 Mch-Chr10:2704261 Mch11g0381 Mch-Chr11:2381181 1.89E-205 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37