Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0385 ATGACAATGGACGTTGCTGCTTCTGAGTCTCAGCAACATTCTCACTACAACCAAAGCCAGGCCACTTCAGCTTCTACTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTCCTCAGCACTATAATGGCGATTTTCTTTCTCCCTTGTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTGTAATGGAGGCAATCAGCAGATCACAACCTCGAGAAATGATGCCAAATCTCCCACCAAAGTTGGAGGACTTTCTTGGTGGTGCAACTCATGGAAGAGAGGCCACAGCTTTAAGCTTAGACAGCATATATTATAATCAAAATGCTGAGGCAGAGTCAGAGAGAGAACACTCTCTGAATCTTTTCAAGCAACAACATGTTTATCTTCAATCTCAGAGATACTATTCTGAAATGTTCCATTTTCCGGCTGAGGAAACCAGTAAGGAGTCTCATATTGCAGGCTATTGTTCTGAAATTCGACAAGCCATGGAGCAGCAAATTGATGGCAGCTTCGGAGGGATGACTTGTCAGGATTTGCAGCCACTTAGCTTGTCAATGAGCCCTGGTTCTCAGTCTAGTTGTGTTACTGCTCCCAGCCAAATTTCCCATTCTGGACCAGCTACATTGGAAACAAAGAAAAGGGGTCCGGCAGGACAAAAGCAGCCAGTCCATCGGAAGTCGATCGACACGTTCGGGCAAAGAACTTCGCAATACAGAGGTGTTACAAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAACAGTTGTAAGAAGGAAGGCCAAACTAGGAAAGGAAGACAAGGTGGCTATGATATGGAGGAGAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTATTGGGGACCCTCCACACATTTAAACTTCTCGCTAAGAAACTATCATGTTGAGATTGAAGAAATGAAGAACATGAACCGCCAAGAATACGTAGCACATCTTAGAAGGAAAAGCAGTGGATTCTCCAGGGGAGCTTCGATATACAGAGGAGTTACTAGACATCATCAGCATGGGAGATGGCAAGCTCGGATCGGACGAGTTGCAGGGAATAAAGACCTCTATCTCGGAACATTTGGCACACAAGAGGAAGCTGCCGAAGCATATGACATAGCAGCTATCAAGTTTCGTGGCGTAAACGCCGTCACAAACTTCGACACTTCGAGGTACAACATAGAAAGGATCATGGCGAGCAGCGGCCTCCTTTCGGGAGAGTTTGCAAGACGAAACAAAGATCTCAAACCAACCAATGCCATCGAGCACAAAGAACCAACACAGAACATTACTCGAATCAACCTCTCAGAGATTTCCAACAGCAACAACATAGATTGGAGGACGGTATTCCACGACACCCTGCTGCTGGATCCAAATGCATCCATCGAATCCTTGGACCAGAAGTCCATGGCTTCCGGAATAGCCCTGCAGCATCTAATCGGAGTCGAAACCGTAAATTGTGATCGGGCAATGGGGAATGATTCAAGCAAGTTAAAGGCACATTTCTCCAATGGTTCCTCTGTGGTGAGCAGCCTGAGTAGCTCAAGGGAAACAAGTCCTGATAAGTCAAATTCCTCTTCCTCAGTGTTATTTGGAAAAGCCCCATTTGAAAGCAATGGGGGAATTTGGCTCCCATCAAACCAGATGAGGCCTGTTCCTATTTCTTTGCCTGTTTGGAATGATGTCTGA 1707 45.58 MTMDVAASESQQHSHYNQSQATSASTVSNTMSNSFLAPQHYNGDFLSPLSVMPLKSDGSLCVMEAISRSQPREMMPNLPPKLEDFLGGATHGREATALSLDSIYYNQNAEAESEREHSLNLFKQQHVYLQSQRYYSEMFHFPAEETSKESHIAGYCSEIRQAMEQQIDGSFGGMTCQDLQPLSLSMSPGSQSSCVTAPSQISHSGPATLETKKRGPAGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHLNFSLRNYHVEIEEMKNMNRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAVTNFDTSRYNIERIMASSGLLSGEFARRNKDLKPTNAIEHKEPTQNITRINLSEISNSNNIDWRTVFHDTLLLDPNASIESLDQKSMASGIALQHLIGVETVNCDRAMGNDSSKLKAHFSNGSSVVSSLSSSRETSPDKSNSSSSVLFGKAPFESNGGIWLPSNQMRPVPISLPVWNDV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2405751 2409375 + MC11g0306 Mch11g0385 679319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0385 568 SMART rav1_2 336 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 SMART rav1_2 237 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 MobiDBLite consensus disorder prediction 190 225 - -
Mch11g0385 568 PRINTS Ethylene responsive element binding protein signature 376 396 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 112 433 - -
Mch11g0385 568 CDD AP2 335 396 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 MobiDBLite consensus disorder prediction 190 207 - -
Mch11g0385 568 MobiDBLite consensus disorder prediction 515 536 - -
Mch11g0385 568 Gene3D AP2/ERF domain 236 302 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 Gene3D AP2/ERF domain 336 396 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 FunFam AP2-like ethylene-responsive transcription factor ANT 236 302 - -
Mch11g0385 568 ProSiteProfiles AP2/ERF domain profile. 237 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 Pfam AP2 domain 237 292 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 Pfam AP2 domain 337 386 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 ProSiteProfiles AP2/ERF domain profile. 336 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 SUPERFAMILY DNA-binding domain 335 395 IPR016177 GO:0003677(InterPro)
Mch11g0385 568 MobiDBLite consensus disorder prediction 1 25 - -
Mch11g0385 568 CDD AP2 236 299 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0385 568 SUPERFAMILY DNA-binding domain 236 301 IPR016177 GO:0003677(InterPro)
Mch11g0385 568 FunFam AP2-like ethylene-responsive transcription factor 335 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0385 Mch-Chr11:2405751 Mch8g1031 Mch-Chr8:7280075 7.49E-117 dispersed
Mch1g1314 Mch-Chr1:15217897 Mch11g0385 Mch-Chr11:2405751 1.11E-155 wgd
Mch11g0385 Mch-Chr11:2405751 Mch8g0606 Mch-Chr8:4348038 1.09E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42565 PF00847 AP2 3.70E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0385 K09285 - csv:101212143 847.04