Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0386 ATGGGTGATCTCGAAAACGACGATATGGGTTTTAGAAATTCGAACGAGGGGTTACTGAATTCTCCATCTTCGGGGAAAATTTCGGGTGTGTTACCGATGGGTTCGGTTTCCGGTAACAAATCGTCTCTTGGAATGGACTCTTTCTTCGCCTCTGGTTGGGATCCACTGGTTTCGTTGGGTCAAAGTGAGAATTTTGGAGCAGCTTCAATGGTGTCCTCCCATGGCGAATTCTCCAGTTCGTTTCCTGTAGTTTTGGAGAACCAGGGAGCGAGTGGGACAACACAGGCCGTTCATTATCCGACAGATTTGGAGATGGGGACGAAGCTGCCCTGTTTTGGCAGTGGGAATTATTCGGACATGTTTGGTTCTTTTGGCCTTTCTGGCCAGATTCTCGGAGCCTGTCCTTCAAATTACAGAAATGGAGGAACTACCAACACTGCACAAACTCAAGAAAATTTACCATTATCTGGAGAAGACGCTGCTGGAGGATCTCCAAGTGGTAAAACCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGCCCGAATAAGAAATCTGAAGGGAAATTGAAGAAGGATGTTTCTGGGGACAGTTCCAGTACGCAAGAGGAGAAGAATGCAGAAATGGAGCAGAATTTAGGTGGGAATTTTCGTGGTAAGGCAACTGGAAAACAAACTAAAGACAAGTCTAATAATAGTGGAGAAGCTCCTAAGGAAAATTACATTCATGTGCGAGCTCGAAGAGGGCAGGCCACAAATAGCCATAGTCTTGCTGAGAGGGTGAGGAGGGAGAAGATCAGTGAGCGGATGAGATTGCTTCAAGAACTTGTTCCCGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTACAGTCATTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAACATCGACATCGAGAGGATTTTATCCAAAGATATTTTCCACGCACGGGGCAGCAATGGAACTGTACTTGGATTCGATCCCGGGTTGAACACTGCTCCCCCGGTCCCTCACCGGATGTTTCAGTTTCAGGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTCTGCCTCAGACGATGTTAGAAACCGATCTCCAAAGTCTTCTTCAAATGGGATTTGACTCCAGTTTGGCCATCGAAAATTTGGGACCAAATGGTATTCTT 1227 45.88 MGDLENDDMGFRNSNEGLLNSPSSGKISGVLPMGSVSGNKSSLGMDSFFASGWDPLVSLGQSENFGAASMVSSHGEFSSSFPVVLENQGASGTTQAVHYPTDLEMGTKLPCFGSGNYSDMFGSFGLSGQILGACPSNYRNGGTTNTAQTQENLPLSGEDAAGGSPSGKTRKRALDSTFPFSPNKKSEGKLKKDVSGDSSSTQEEKNAEMEQNLGGNFRGKATGKQTKDKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLNTAPPVPHRMFQFQGTMSNMPTTSTQFPPLPQTMLETDLQSLLQMGFDSSLAIENLGPNGIL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2416136 2419497 + MC11g0307 Mch11g0386 679320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0386 409 Gene3D - 247 319 IPR036638 GO:0046983(InterPro)
Mch11g0386 409 Pfam Helix-loop-helix DNA-binding domain 253 301 IPR011598 GO:0046983(InterPro)
Mch11g0386 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 300 IPR011598 GO:0046983(InterPro)
Mch11g0386 409 FunFam Basic helix-loop-helix transcription factor 247 319 - -
Mch11g0386 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 315 IPR036638 GO:0046983(InterPro)
Mch11g0386 409 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 122 379 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch11g0386 409 MobiDBLite consensus disorder prediction 185 199 - -
Mch11g0386 409 MobiDBLite consensus disorder prediction 142 240 - -
Mch11g0386 409 SMART finulus 256 306 IPR011598 GO:0046983(InterPro)
Mch11g0386 409 CDD bHLH_AtBPE_like 240 325 - -
Mch11g0386 409 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0386 Mch-Chr11:2416136 Mch4g1534 Mch-Chr4:18722502 2.18E-47 dispersed
Mch11g0386 Mch-Chr11:2416136 Mch9g0278 Mch-Chr9:2081253 2.15E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42566 PF00010 HLH 4.30E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0386 - - - 0.0