Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0386 | ATGGGTGATCTCGAAAACGACGATATGGGTTTTAGAAATTCGAACGAGGGGTTACTGAATTCTCCATCTTCGGGGAAAATTTCGGGTGTGTTACCGATGGGTTCGGTTTCCGGTAACAAATCGTCTCTTGGAATGGACTCTTTCTTCGCCTCTGGTTGGGATCCACTGGTTTCGTTGGGTCAAAGTGAGAATTTTGGAGCAGCTTCAATGGTGTCCTCCCATGGCGAATTCTCCAGTTCGTTTCCTGTAGTTTTGGAGAACCAGGGAGCGAGTGGGACAACACAGGCCGTTCATTATCCGACAGATTTGGAGATGGGGACGAAGCTGCCCTGTTTTGGCAGTGGGAATTATTCGGACATGTTTGGTTCTTTTGGCCTTTCTGGCCAGATTCTCGGAGCCTGTCCTTCAAATTACAGAAATGGAGGAACTACCAACACTGCACAAACTCAAGAAAATTTACCATTATCTGGAGAAGACGCTGCTGGAGGATCTCCAAGTGGTAAAACCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGCCCGAATAAGAAATCTGAAGGGAAATTGAAGAAGGATGTTTCTGGGGACAGTTCCAGTACGCAAGAGGAGAAGAATGCAGAAATGGAGCAGAATTTAGGTGGGAATTTTCGTGGTAAGGCAACTGGAAAACAAACTAAAGACAAGTCTAATAATAGTGGAGAAGCTCCTAAGGAAAATTACATTCATGTGCGAGCTCGAAGAGGGCAGGCCACAAATAGCCATAGTCTTGCTGAGAGGGTGAGGAGGGAGAAGATCAGTGAGCGGATGAGATTGCTTCAAGAACTTGTTCCCGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATTATCAACTATGTACAGTCATTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAACATCGACATCGAGAGGATTTTATCCAAAGATATTTTCCACGCACGGGGCAGCAATGGAACTGTACTTGGATTCGATCCCGGGTTGAACACTGCTCCCCCGGTCCCTCACCGGATGTTTCAGTTTCAGGGGACGATGTCGAATATGCCAACCACATCCACACAGTTTCCTCCTCTGCCTCAGACGATGTTAGAAACCGATCTCCAAAGTCTTCTTCAAATGGGATTTGACTCCAGTTTGGCCATCGAAAATTTGGGACCAAATGGTATTCTT | 1227 | 45.88 | MGDLENDDMGFRNSNEGLLNSPSSGKISGVLPMGSVSGNKSSLGMDSFFASGWDPLVSLGQSENFGAASMVSSHGEFSSSFPVVLENQGASGTTQAVHYPTDLEMGTKLPCFGSGNYSDMFGSFGLSGQILGACPSNYRNGGTTNTAQTQENLPLSGEDAAGGSPSGKTRKRALDSTFPFSPNKKSEGKLKKDVSGDSSSTQEEKNAEMEQNLGGNFRGKATGKQTKDKSNNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLNTAPPVPHRMFQFQGTMSNMPTTSTQFPPLPQTMLETDLQSLLQMGFDSSLAIENLGPNGIL | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2416136 | 2419497 | + | MC11g0307 | Mch11g0386 | 679320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0386 | 409 | Gene3D | - | 247 | 319 | IPR036638 | GO:0046983(InterPro) | |
Mch11g0386 | 409 | Pfam | Helix-loop-helix DNA-binding domain | 253 | 301 | IPR011598 | GO:0046983(InterPro) | |
Mch11g0386 | 409 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 250 | 300 | IPR011598 | GO:0046983(InterPro) | |
Mch11g0386 | 409 | FunFam | Basic helix-loop-helix transcription factor | 247 | 319 | - | - | |
Mch11g0386 | 409 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 248 | 315 | IPR036638 | GO:0046983(InterPro) | |
Mch11g0386 | 409 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 122 | 379 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Mch11g0386 | 409 | MobiDBLite | consensus disorder prediction | 185 | 199 | - | - | |
Mch11g0386 | 409 | MobiDBLite | consensus disorder prediction | 142 | 240 | - | - | |
Mch11g0386 | 409 | SMART | finulus | 256 | 306 | IPR011598 | GO:0046983(InterPro) | |
Mch11g0386 | 409 | CDD | bHLH_AtBPE_like | 240 | 325 | - | - | |
Mch11g0386 | 409 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0386 | Mch-Chr11:2416136 | Mch4g1534 | Mch-Chr4:18722502 | 2.18E-47 | dispersed | |
Mch11g0386 | Mch-Chr11:2416136 | Mch9g0278 | Mch-Chr9:2081253 | 2.15E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42566 | PF00010 | HLH | 4.30E-06 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0386 | - | - | - | 0.0 |