Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0388 ATGACTATTCTGGTTTCCGCCGACCGCAGGTTCCGGCGGAGCCCTAGAAAGCCCCTACTCCCCGACAAATACGACCACCAGGAGTCTCTCGAGGTAGGGTCAGATGGCGCATCGTTCTCCGGCGCCGTCTTCAATCTCTCCAGCACCATCGTCGGCGCCGGAATCATGGCTCTTCCGGCAGCCGTGAAACAATTAGGTCTGATTCCCGGATTGGTCATGATCGTGCTGGGATCCACGCTCACGGAGATGTCAATTGACTTCATCCTGAAATTCTCTCGGGCTTCCAAGTCCGTGACGTACGCCAGCGCCGTCGGCGACTTTCTCGGCGGCGCCGCCCGGACCCTCCTGCAGATATGCATCGTGGTCAATAACTTGGGTATGCTCGTCGTCTACATGATCATCATTGGTGATGTGTTTTCAGGAACATGGGCAAATGACGTCCATCATAAGGGTGTCATGGAAGAATGGTTCGGTCAGCGTTGGTGGACCACCCGCATTTCCTTGATGCTTCTTACGACACTTCTGATTTTTGTGCCTCTTACCACCTTTAAGCGTGTAGATTCTTTGAGATACACATCAGCATTGTCAGTGGGCCTCGCCATTGTATTTGTGGCGATCACGGCTGGAGTAGTGATCGCGAAAGTGGATGGGAGTATCGGAATGCCACGTCTGATGCCCAAACTCATTGATCAGGCATCATTTTGGCAATTCACCACTGTTCCAATCCTAGTCACTGCCTATATCTGTCACCATAATGTTCACCCTATTGAAAATGAACTAAAAGATCCAACACAAATGAAGTCAATAGTTCGAACATCTCTAGCGATATGCTCCTCGGTATATATTGCGACGAGCTTCTTTGGATTTCTCCTGTTTGGAGATCAAACGCTGGACGATGTTCTTGCGAATTTTGATGGAGATCTTGGACTTCCATACAGCTCATTGCTTGATGATGTTGTAAGGGTGAGCTATGCCATCCACCTGATGCTTGTATTTCCAATTGTTTTTTTCTCCCTTCGCCTCAATGTTGATGGTCTTCTCTTTCCCTATGCCATACCTATTGCTGTCGATAACCGACGATTCTTCTCGATAACCATAGCTCTCATGAGTTTCATCTTCATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTCCAGCTCACTGGAGCCACTGCTGCCATCTCTGTTGGGTTCATATTCCCGGCTGCTCTCGTCCTCAGGGACACTTGTGGAGTTGCATCAAAGAAAGACAGACTAGTAGCATGGATTATGTTCGTATTAGCTATATCGTCGAGTTTTGCAGCAATCTCGACCGATATCTACAGCATTTTCATGATCGAGAAA 1347 48.63 MTILVSADRRFRRSPRKPLLPDKYDHQESLEVGSDGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLVMIVLGSTLTEMSIDFILKFSRASKSVTYASAVGDFLGGAARTLLQICIVVNNLGMLVVYMIIIGDVFSGTWANDVHHKGVMEEWFGQRWWTTRISLMLLTTLLIFVPLTTFKRVDSLRYTSALSVGLAIVFVAITAGVVIAKVDGSIGMPRLMPKLIDQASFWQFTTVPILVTAYICHHNVHPIENELKDPTQMKSIVRTSLAICSSVYIATSFFGFLLFGDQTLDDVLANFDGDLGLPYSSLLDDVVRVSYAIHLMLVFPIVFFSLRLNVDGLLFPYAIPIAVDNRRFFSITIALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGVASKKDRLVAWIMFVLAISSSFAAISTDIYSIFMIEK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2430912 2433893 - MC11g0309 Mch11g0388 679322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0388 449 PANTHER AMINO ACID TRANSPORTER 35 434 - GO:0003333(PANTHER)|GO:0015179(PANTHER)
Mch11g0388 449 Pfam Transmembrane amino acid transporter protein 37 437 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0388 K14207 - - csv:101204458 771.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0388 Mch-Chr11:2430912 Mch8g2381 Mch-Chr8:26913771 3.60E-171 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g1289 . 27 493 Amino Acid/Auxin Permease AAAP Family AT2G41190 62.0 1.4e-154 543.1
Mch5g1291 . 1 347 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.9 1.6e-105 380.2
Mch9g1801 . 173 499 Amino Acid/Auxin Permease AAAP Family AT2G41190 52.0 1.9e-93 340.1
Mch1g0860 . 3 188 Amino Acid/Auxin Permease AAAP Family AT2G41190 59.2 6.2e-57 218.8
Mch8g2381 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 70.2 1.5e-179 625.9
Mch11g0388 . 18 445 Amino Acid/Auxin Permease AAAP Family AT3G30390 57.4 1.1e-137 486.9
Mch8g1740 . 61 466 Amino Acid/Auxin Permease AAAP Family AT3G28960 57.2 2.5e-133 472.2
Mch8g1732 . 4 379 Amino Acid/Auxin Permease AAAP Family AT3G28960 54.4 2.7e-119 425.6
Mch9g2129 . 1 368 Amino Acid/Auxin Permease AAAP Family AT3G28960 50.8 7.6e-106 380.9
Mch8g2381 . 21 458 Amino Acid/Auxin Permease AAAP Family AT5G38820 70.0 5.2e-172 600.9
Mch11g0388 . 35 445 Amino Acid/Auxin Permease AAAP Family AT5G38820 57.9 3.0e-135 478.8
Mch9g0446 . 3 489 Amino Acid/Auxin Permease AAAP Family AT1G80510 74.0 3.0e-189 658.3
Mch9g1801 . 57 562 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.4 2.0e-125 446.4
Mch9g1801 . 1 497 Amino Acid/Auxin Permease AAAP Family AT2G39130 67.1 2.3e-181 632.1
Mch9g1809 . 6 488 Amino Acid/Auxin Permease AAAP Family AT2G39130 66.1 1.9e-175 612.5
Mch4g2041 . 1 494 Amino Acid/Auxin Permease AAAP Family AT2G39130 64.0 6.1e-166 580.9
Mch8g1740 . 131 466 Amino Acid/Auxin Permease AAAP Family AT5G15240 58.3 4.4e-107 384.8
Mch8g1732 . 46 379 Amino Acid/Auxin Permease AAAP Family AT5G15240 53.9 2.4e-97 352.4
Mch9g1405 . 10 427 Amino Acid/Auxin Permease AAAP Family AT3G56200 62.7 8.3e-143 503.8
Mch9g1406 . 22 433 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.4 3.2e-134 475.3
Mch9g1809 . 1 524 Amino Acid/Auxin Permease AAAP Family AT3G54830 59.9 1.3e-164 576.6
Mch9g1801 . 1 530 Amino Acid/Auxin Permease AAAP Family AT3G54830 59.2 4.8e-164 574.7
Mch4g2041 . 1 508 Amino Acid/Auxin Permease AAAP Family AT3G54830 59.1 9.7e-157 550.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30