Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0393 ATGGACGGCGATTGTAGTACCGGCACCGGCCTTCTTCTTGGCCTTGGCCGGAGTGAGCGTAATCCTCTGCGGTCGCTCGTACCCGAAGTGGACGTGAAGAAGAAATTGGTGTTGAAGTTCGATGACATTTTGCCTTGTTTGACGCTTGGGTTGTCGGGCCCCACCCCGGCTGGATTCTCGGTGGCGGAGATCATCGTCGGGAAGACTACGGCCGCCGAGGAGTTGCTACAGCAGGGCTCTTCGGCAAGTCCGGTGTCGTCGTTTTCCAACTCCTCCGGGTCTAAGAGGGACAGATCAGACGGATGGATCGGCGGCGGCGAAGAGAGGGAGGCGGAGGCGGCGGAGATTTATTTGGAGAGGGTGTCTTCGAAAGTTGGTGATCAGGAAGATGAAGATGGAAGTCCGAGGAAGAAACTGAGACTCACTAAAGAACAATCCGCCATTTTAGAAGATAGCTTCAAAGAACACTCAAGTCTTACTCCGAAACAAAAGCTGGATTTGGCTAGGCAATTAAGCCTAAGGCCACGACAAGTGGAAGTATGGTTCCAAAACAGACGAGCCAGAACCAAGCTGAAGCAAACGGAAATGGACTGCGAACTACTGAAAAAATGCTGCGAAAAGCTCAAAGAAGAGAACACGAGGCTTCAGAAAGAGCTTCAAGAGCTTAAATCGTTAAAGTTAACGGCTCCGCCATTTTGTATGCAGCTACAAGCGGCCACCCTCACCGTCTGCCCCTCCTGCGAGAGATCCATTTGCGGCGGCGGAGGCGGCGGCGATGCGTCTCCGACCACCGCCTTCTCCATTGGGTCGAAGCCTACTTTTCTCAAATTCCCCTTTAACCACCCATCCGCGGCTTGTTAG 861 53.31 MDGDCSTGTGLLLGLGRSERNPLRSLVPEVDVKKKLVLKFDDILPCLTLGLSGPTPAGFSVAEIIVGKTTAAEELLQQGSSASPVSSFSNSSGSKRDRSDGWIGGGEEREAEAAEIYLERVSSKVGDQEDEDGSPRKKLRLTKEQSAILEDSFKEHSSLTPKQKLDLARQLSLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLTAPPFCMQLQAATLTVCPSCERSICGGGGGGDASPTTAFSIGSKPTFLKFPFNHPSAAC 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2477892 2479799 + MC11g0314 Mch11g0393 679327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0393 286 FunFam Homeobox-leucine zipper protein 18 121 197 - -
Mch11g0393 286 Gene3D - 128 197 - -
Mch11g0393 286 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch11g0393 286 MobiDBLite consensus disorder prediction 77 97 - -
Mch11g0393 286 CDD homeodomain 135 193 IPR001356 GO:0003677(InterPro)
Mch11g0393 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 78 250 IPR050762 -
Mch11g0393 286 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677(InterPro)
Mch11g0393 286 SMART HOX_1 134 196 IPR001356 GO:0003677(InterPro)
Mch11g0393 286 Pfam Homeobox associated leucine zipper 192 225 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0393 286 MobiDBLite consensus disorder prediction 77 105 - -
Mch11g0393 286 Pfam Homeodomain 136 190 IPR001356 GO:0003677(InterPro)
Mch11g0393 286 SMART halz 192 235 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch11g0393 286 Coils Coil 191 228 - -
Mch11g0393 286 SUPERFAMILY Homeodomain-like 133 200 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0637 Mch-Chr10:4355527 Mch11g0393 Mch-Chr11:2477892 6.94E-73 dispersed
Mch11g0393 Mch-Chr11:2477892 Mch5g1450 Mch-Chr5:15582998 1.91E-59 dispersed
Mch1g1325 Mch-Chr1:15326825 Mch11g0393 Mch-Chr11:2477892 1.43E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42568 PF00046 Homeodomain 2.00E-16 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0393 K09338 - csv:101212868 298.901