Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0394 ATGGAGGAATATAATCACCTAAACGAGAACTCAAATCCGAGAGGAAATTTCTTGTACGCGTCACCGGTTGTTGCGGCGAATTCTTCACCGGGTAATTATGGGAGATCCACGAATCCGACGGCTCAGACGGCTCAGATGGGTGTTAATACGTTCCATCTTCAACCGGGAACCGACTGTTTCCAAACCGACCAATCGCACCCGATTGTGAAGACCGAAGCCAGTACTTCGCAGCACCAAGTCCTCAAATTCCACTACCCTTTGATTAGAGGAGGGCAGCCGACGACATGTCGTCCCGACGACAACGCCGTTGTCGACGTTGAAGCCATTAAGGCCAAAATCGTTGCTCACCCTCAATACTCCAGCCTCCTCGAAGCCTACATGGAATGTCAGAAGGTGGGTGCTCCGGCGCAAGTGGTGGAGCGGCTGGCGGCGGTGCGGCAAGAATTTGAGGCTCGGCAGCGATCTTCTATGGTGGCGGGAGAGATCACGAAGGATCCAGAACTTGATCAATTCATGGAAGCTTACTACGACATGTTGGTGAAATATCGGGAGGAACTTACGAGGCCAATTCAAGAAGCCATGGATTTCATGAGAAGGATCGAATCTCAGCTCGGTTCCCTCTGTAACGGCCCCGTTCGGATCTTCAATTCCGACGAAAAATGTGAGGGTATGGGATCATCTGATGAGGATCAGGACAATAGTGGCGGAGAAACCGAACTACCCGAGATCGACCCACGTGCCGAGGATAGAGAACTGAAGAACCACCTACTGAGGAAGTACAGTGGCTACCTGAGCAGTCTCAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGCAAACTCCCAAAAGATGCAAGGCAGAAACTTCTTAATTGGTGGGAGTTACACTACAAATGGCCATACCCTTCAGAGACAGAGAAGGTGGCATTGGCTGAATCCACTGGGTTGGATCAGAAGCAAATAAACAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAGGATATGCAGTTCATGGTGATGGATGGCCTCCACCCTCCCAACGCCGCCCTCTATATCGACGGTCACTACATGACCGATGGCCATTATCGGCTCGGACCGTGA 1110 50.45 MEEYNHLNENSNPRGNFLYASPVVAANSSPGNYGRSTNPTAQTAQMGVNTFHLQPGTDCFQTDQSHPIVKTEASTSQHQVLKFHYPLIRGGQPTTCRPDDNAVVDVEAIKAKIVAHPQYSSLLEAYMECQKVGAPAQVVERLAAVRQEFEARQRSSMVAGEITKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIESQLGSLCNGPVRIFNSDEKCEGMGSSDEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPPNAALYIDGHYMTDGHYRLGP 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2483045 2487517 - MC11g0315 Mch11g0394 679328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0394 369 MobiDBLite consensus disorder prediction 218 248 - -
Mch11g0394 369 Pfam ELK domain 251 272 IPR005539 GO:0003677(InterPro)
Mch11g0394 369 SUPERFAMILY Homeodomain-like 272 347 IPR009057 -
Mch11g0394 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 110 341 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch11g0394 369 SMART HOX_1 273 338 IPR001356 GO:0003677(InterPro)
Mch11g0394 369 SMART KNOX1_2 107 151 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0394 369 Gene3D - 276 338 - -
Mch11g0394 369 SMART ELK_2 251 272 IPR005539 GO:0003677(InterPro)
Mch11g0394 369 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677(InterPro)
Mch11g0394 369 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch11g0394 369 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch11g0394 369 Pfam KNOX2 domain 162 208 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0394 369 CDD homeodomain 283 335 IPR001356 GO:0003677(InterPro)
Mch11g0394 369 FunFam Homeobox protein knotted-1-like 2 276 338 - -
Mch11g0394 369 Pfam KNOX1 domain 108 150 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0394 369 SMART KNOX2_2 158 209 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0394 369 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0394 Mch-Chr11:2483045 Mch1g1729 Mch-Chr1:17858038 1.22E-88 dispersed
Mch11g0394 Mch-Chr11:2483045 Mch6g0144 Mch-Chr6:909398 6.11E-80 wgd
Mch11g0394 Mch-Chr11:2483045 Mch8g0595 Mch-Chr8:4244733 2.21E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42569 PF03791 KNOX2 1.40E-25 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0394 - - - 0.0