Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0396 GTGGACGGGTTTTCCTGCGACCATTTCCGGATGTTCGAGTTCAAAATCCGGAGATGCGCGCGTGGCCGGTCCCACGATTGGACAGAGTGTCCCTACGCGCACCCCGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAGTATCACTATTCCGGCACGGCGTGCCCCGAGTTCCGGAAAGGGAATTGCAAGAAAGGGGATTCGTGCGATCTCGCTCACGGGATTTTCGAGTGCTGGCTCCACCCGGCTCGGTACCGGACTCAGCCGTGTAAGGACGGACTCGCCTGCCGCCGCCGCGTCTGCTTTTTCGCCCACTCGCCGGAGCAGCTCCGTGTCCTGCCCAGGACTCCGGTTTCGGCCGATTCCGTTGATGGGTCGTCTCGAATTGCACTCGCATTCGACTCGTATTTGGCGAAGGCCTCGTTCGTGACGTCGCCCACTTCGATTCTATCCACGCCGCCCGATTCACCTCCGTTGTCGCCGAATTGCCCCCAAATCGGCGGCGGGTCGTTTAATTCGATGAATGGGATCGTTGCTTCTATGCATAAGCTACAAATTGGGAAATCGAAATCAAGCCCTCAATGGGGGGTTCAGATGGCACAAGGTCTCTGTTCTCCGTCCGGCGGTGGTTGTGGTTTCTACAGCTCGCCGACGACTCCGACGACCGGAAAATACGAGTTGTGGGGGAAAAACTACGTGGAAGAACCGGCGATGGAGAGAGTGGAATCTGGGAGAGACCTTCGAGCCAAAATGTATGCGAAACTGAGCAAAGACAACTCGGTGGAGCAGCTGACACCCGATGTCGGGTGGGTCTCGGAGCTACTAAAG 825 58.18 VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHSPEQLRVLPRTPVSADSVDGSSRIALAFDSYLAKASFVTSPTSILSTPPDSPPLSPNCPQIGGGSFNSMNGIVASMHKLQIGKSKSSPQWGVQMAQGLCSPSGGGCGFYSSPTTPTTGKYELWGKNYVEEPAMERVESGRDLRAKMYAKLSKDNSVEQLTPDVGWVSELLK 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2510719 2511543 + MC11g0317 Mch11g0396 679330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0396 275 SMART c3hfinal6 48 74 IPR000571 GO:0046872(InterPro)
Mch11g0396 275 SMART c3hfinal6 83 106 IPR000571 GO:0046872(InterPro)
Mch11g0396 275 Gene3D - 45 115 - -
Mch11g0396 275 PANTHER UNKEMPT FAMILY MEMBER 4 275 IPR045234 -
Mch11g0396 275 ProSiteProfiles Zinc finger C3H1-type profile. 49 75 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0396 Mch-Chr11:2510719 Mch8g3199 Mch-Chr8:34150729 2.17E-96 dispersed
Mch11g0396 Mch-Chr11:2510719 Mch6g0886 Mch-Chr6:6190545 2.85E-103 wgd
Mch11g0396 Mch-Chr11:2510719 Mch8g0594 Mch-Chr8:4229834 1.33E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42570 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0396 - - - 0.0