Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0396 | GTGGACGGGTTTTCCTGCGACCATTTCCGGATGTTCGAGTTCAAAATCCGGAGATGCGCGCGTGGCCGGTCCCACGATTGGACAGAGTGTCCCTACGCGCACCCCGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAGTATCACTATTCCGGCACGGCGTGCCCCGAGTTCCGGAAAGGGAATTGCAAGAAAGGGGATTCGTGCGATCTCGCTCACGGGATTTTCGAGTGCTGGCTCCACCCGGCTCGGTACCGGACTCAGCCGTGTAAGGACGGACTCGCCTGCCGCCGCCGCGTCTGCTTTTTCGCCCACTCGCCGGAGCAGCTCCGTGTCCTGCCCAGGACTCCGGTTTCGGCCGATTCCGTTGATGGGTCGTCTCGAATTGCACTCGCATTCGACTCGTATTTGGCGAAGGCCTCGTTCGTGACGTCGCCCACTTCGATTCTATCCACGCCGCCCGATTCACCTCCGTTGTCGCCGAATTGCCCCCAAATCGGCGGCGGGTCGTTTAATTCGATGAATGGGATCGTTGCTTCTATGCATAAGCTACAAATTGGGAAATCGAAATCAAGCCCTCAATGGGGGGTTCAGATGGCACAAGGTCTCTGTTCTCCGTCCGGCGGTGGTTGTGGTTTCTACAGCTCGCCGACGACTCCGACGACCGGAAAATACGAGTTGTGGGGGAAAAACTACGTGGAAGAACCGGCGATGGAGAGAGTGGAATCTGGGAGAGACCTTCGAGCCAAAATGTATGCGAAACTGAGCAAAGACAACTCGGTGGAGCAGCTGACACCCGATGTCGGGTGGGTCTCGGAGCTACTAAAG | 825 | 58.18 | VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHSPEQLRVLPRTPVSADSVDGSSRIALAFDSYLAKASFVTSPTSILSTPPDSPPLSPNCPQIGGGSFNSMNGIVASMHKLQIGKSKSSPQWGVQMAQGLCSPSGGGCGFYSSPTTPTTGKYELWGKNYVEEPAMERVESGRDLRAKMYAKLSKDNSVEQLTPDVGWVSELLK | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2510719 | 2511543 | + | MC11g0317 | Mch11g0396 | 679330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0396 | 275 | SMART | c3hfinal6 | 48 | 74 | IPR000571 | GO:0046872(InterPro) | |
Mch11g0396 | 275 | SMART | c3hfinal6 | 83 | 106 | IPR000571 | GO:0046872(InterPro) | |
Mch11g0396 | 275 | Gene3D | - | 45 | 115 | - | - | |
Mch11g0396 | 275 | PANTHER | UNKEMPT FAMILY MEMBER | 4 | 275 | IPR045234 | - | |
Mch11g0396 | 275 | ProSiteProfiles | Zinc finger C3H1-type profile. | 49 | 75 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0396 | Mch-Chr11:2510719 | Mch8g3199 | Mch-Chr8:34150729 | 2.17E-96 | dispersed | |
Mch11g0396 | Mch-Chr11:2510719 | Mch6g0886 | Mch-Chr6:6190545 | 2.85E-103 | wgd | |
Mch11g0396 | Mch-Chr11:2510719 | Mch8g0594 | Mch-Chr8:4229834 | 1.33E-90 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42570 | None | None | None | None | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0396 | - | - | - | 0.0 |