Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0410 ATGTCGAAAATGAAACATCTTCTCCGAAAGCTTCACATCGGTGGGGGGCTTAATGAGCACCAGCGATTGAGCGATGCCCGACCTGTGGCGCGACCCAGTTCGAGCCCCAGTCCCGGCCCCAGCCCCAATAGTAATCCATCGGCTTCTTCTTCTTCTGGCTCTTCATCGTCTCTGTCCATGGCGTCTTCTACGACAATTGGGAGATTGGAGGCTGTTGAATCGGTCGTTGATCGGACGGCTGCGGGGGATGTGGGCGGTGGGTGCGTCGATTTCAATGCCTTGGAGGAGGAGTTTCAGGTGCAATTGGCCATGGCGATTAGCGCCTCGGATCCCGATTCCAGACAAGATACTGAGTCGGCTCAGATCGATGCCGCCAAGCGGATGAGCCTTGGATGTTCGCCATCGGTGTTCGGCAGTCAAGCCCTCGCGGAGTTTCTATCGCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATGGATGGATTTTATGACCTATATGGAATTACTGCAAGCTCTAGCACCCGAGGGAAGATGCCACTATTAGTTGATCTTAAGGAAATATCTGTCACGAGTGATATAGATTATGAAGTGATCTTGGTAAACCGCTTGCGTGATCCTGAACTTCAACAGTTGGAGAGACAAGCATATAACATATTCATGGAATGCATGGTTTCTGAATATGGTTTCATTTTAAGTGGCCTGGTACAAAAAATTGCTGATATAGTTGTTGCCAGAATGGGTGGTCCTGTTGGTGATGCTGAAGAAATGTTGAGAAGGTGGACTCGTAGGAGTTATGAGTTGCGTAGTTCTCTAAAGACCATTATTCTACCGCTTGGATGCCTTGATATTGGACTTGCTCGACATAGAGCTTTGCTTTTTAAGGTACTAGCTGATAGGATTAATCTTCCATGTATACTTGTCAAAGGAAGCTACTACACTGGTACTGATGATGGAGCTGTGAATATGATCAAAATCGATAACGGAAGTGAATATATTATTGATCTTATGGGTGCTCCAGGCACGCTAATTCCCTCAGAGGCACCCAGCGGTCAATTTTCAAATTATGGCTTTGATAGGAGACCTGCAGATGTTATTGCAGTTCCTGAAGAGACGCCAGTATCACAAAATGAAGGAAGCGAATTGGTATTGATTTCATCTGCTCAAGATGGAGTAGTAAATGGTTGCGATTCAATGTTCAAAGAAGCTTCAGATATAGGTGTTCAACCAAGAGAGAACGTTAGGAACTTTATTGAAGAAATTCAAACTGGGAGTTCTGATTATGATTTTGGGAAGCTCCTAGAATCAGGCAGCAATGCATGTGAAAGTTTGGAAGGTGTAGGTGGACAGCCATCGTCTGCACAAAAGAAGAAAGTTAAAAAAGTTTCGAAGTATGTCATTAGCGCTGCAAAGAACCCAGAGTTTGCTCAGAAATTACATGCTGTCTTGCTAGAGAGTGGTGCATCACCTCCTGCTGATTTGTTTTCAGACATAGATTCACAGGATAATGGTGAAAGAAAAGCGATTCACCAAATGTATTCAATCAATGGGAAAGGCATGGATGTTGGGCTTCAATGCCACCTAGAGTTAGCAAGACATGGACAGTCTTCTGCTACTTCTACTGCAGTGGAGTATTTGAATAATGCTGTCCATGAAAATAAGCAGAAAGTGTTTACTGAGGGATTATCCGAAGAACAAACACTTGGGACAAATGTGAACAAGCACGGTATTTTTTGGCCTCACGGTGTGACAAACGAGGGATTTGTGTTTGTTGATGGTGAAGCTGGAAAATTGGTTGATGTTAACGGAACTTTTAATCGTGAACAAATGGATGGTGTTTCATTAACCTCTGATGCTGACTCTCATAAAAAACAACAAGGAACTGCCTTAGTGAGCGAAGAGAGAAAATGGTTGCAAGATAAGAGTGGTGGAATTCTTCAATGCTTTGATTTTCGTGAAAATCCGTCGGAAAATTTAATAGAAACTGCTGATAGTAACCTGCATACTGCTGATAGCCCCAGTGAGACGATTAACCCAATGTTGGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTCACATTGGTGAACGTATTGGTATTGGTTCATATGGCGAGGTTTATCGTGCAGATTGGAATGGCACTGAAGTTGCTGTGAAGAAGTTCTTGGACCAAGATTTTTCCGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTCGAAATCATGTTAAGACTGAGGCATCCAAATGTTGTCCTTTTCATGGGAGCAGTCACTCGCCCTCCTCATTTCTCTATCCTTACTGAGTTTCTTCCCAGGGGAAGTTTGTATAGGTTATTGCATCGTCCCAATTCTCAACTTGACGAAAGGAGACGATTGAAAATGGCTCTTGATGTGGCCAAAGGAATGAACTACCTGCACACAAGCCATCCTACCATTGTTCATAGAGATCTGAAGTCTCCCAATCTACTTGTTGATAAAAACTGGGTTGTCAAGGTTTGCGATTTTGGCTTGTCACGTGTCAAGCAGAATACATTTCTGTCTTCAAAGTCAACTGCTGGAACGCCTGAATGGATGGCACCAGAGGTTCTAAGGAACGAACCAGCCAACGAGAAGTGTGATGTGTATAGTTTTGGTGTGATATTGTGGGAGTTGACGACGTCCCGCATCCCGTGGAAAGGTTTGAACCCAATGCAGGTTGTGGGGGCTGTTGGATTCCAGGATAGGCGCTTGGAGATCCCAGAAGATGTCGATCCAGCAGTTGCACAGATCATTTGTGAATGTTGGCAAACGGACACGCAATCGAGGCCATCTTTCTCTCAGCTTATTACTCGATTGCGGCGCCTTCAACGGCTCGTTCAGAGAACGAACTCCGGGAATCAAATACCGGAGTGA 2904 44.35 MSKMKHLLRKLHIGGGLNEHQRLSDARPVARPSSSPSPGPSPNSNPSASSSSGSSSSLSMASSTTIGRLEAVESVVDRTAAGDVGGGCVDFNALEEEFQVQLAMAISASDPDSRQDTESAQIDAAKRMSLGCSPSVFGSQALAEFLSLQYWSYNVVNYDEKVMDGFYDLYGITASSSTRGKMPLLVDLKEISVTSDIDYEVILVNRLRDPELQQLERQAYNIFMECMVSEYGFILSGLVQKIADIVVARMGGPVGDAEEMLRRWTRRSYELRSSLKTIILPLGCLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKIDNGSEYIIDLMGAPGTLIPSEAPSGQFSNYGFDRRPADVIAVPEETPVSQNEGSELVLISSAQDGVVNGCDSMFKEASDIGVQPRENVRNFIEEIQTGSSDYDFGKLLESGSNACESLEGVGGQPSSAQKKKVKKVSKYVISAAKNPEFAQKLHAVLLESGASPPADLFSDIDSQDNGERKAIHQMYSINGKGMDVGLQCHLELARHGQSSATSTAVEYLNNAVHENKQKVFTEGLSEEQTLGTNVNKHGIFWPHGVTNEGFVFVDGEAGKLVDVNGTFNREQMDGVSLTSDADSHKKQQGTALVSEERKWLQDKSGGILQCFDFRENPSENLIETADSNLHTADSPSETINPMLGEVAEWEIPWEDLHIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDFSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTSRIPWKGLNPMQVVGAVGFQDRRLEIPEDVDPAVAQIICECWQTDTQSRPSFSQLITRLRRLQRLVQRTNSGNQIPE 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2575785 2585254 - MC11g0330 Mch11g0410 679344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0410 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 Pfam Ethylene-responsive protein kinase Le-CTR1 143 347 - -
Mch11g0410 967 ProSitePatterns Protein kinases ATP-binding region signature. 703 725 IPR017441 GO:0005524(InterPro)
Mch11g0410 967 Gene3D Phosphorylase Kinase; domain 1 690 774 - -
Mch11g0410 967 PRINTS Tyrosine kinase catalytic domain signature 920 942 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 PRINTS Tyrosine kinase catalytic domain signature 810 828 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 PRINTS Tyrosine kinase catalytic domain signature 771 784 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 PRINTS Tyrosine kinase catalytic domain signature 857 867 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 PRINTS Tyrosine kinase catalytic domain signature 876 898 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 FunFam Serine/threonine-protein kinase CTR1 776 959 - -
Mch11g0410 967 Gene3D Transferase(Phosphotransferase) domain 1 776 962 - -
Mch11g0410 967 ProSiteProfiles Protein kinase domain profile. 697 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 MobiDBLite consensus disorder prediction 44 60 - -
Mch11g0410 967 FunFam Serine/threonine-protein kinase isoform 1 688 775 - -
Mch11g0410 967 MobiDBLite consensus disorder prediction 11 60 - -
Mch11g0410 967 Pfam Protein tyrosine and serine/threonine kinase 697 949 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 SMART serkin_6 697 956 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0410 967 PANTHER SERINE-THREONINE PROTEIN KINASE 40 952 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch11g0410 967 SUPERFAMILY Protein kinase-like (PK-like) 673 947 IPR011009 -
Mch11g0410 967 CDD STKc_MAP3K-like 703 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0410 Mch-Chr11:2575785 Mch3g1592 Mch-Chr3:17863029 5.23E-227 dispersed
Mch8g2922 Mch-Chr8:31967533 Mch11g0410 Mch-Chr11:2575785 2.67E-21 dispersed
Mch11g0410 Mch-Chr11:2575785 Mch1g0900 Mch-Chr1:12340518 4.71E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77044 PF07714 PK_Tyr_Ser-Thr 2.00E-65 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0410 K04424 - csv:101214554 1613.97