Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0417 ATGATGATGGAAGGAAATTTAATGGTGGATGAGAATTTGTCTGTGTTGACTACTTGTGCATCTGCTGATCAAATAACAAGAAATGAAACTGCCACCGACCCTCTGTATTCTCATCACTCCTCTGCTTCTACAAATCAACATCGGAAGAGGAAACGGAATCTTCCTGGCAACCCAGACCCGGGAGCGGAAGTGATAGCCTTGTCTCCAAAAGCGCTTTTGGCGACGAACAGATTCATTTGCGAGATCTGCAACAAGGGATTTCAGAGAGATCAGAACCTTCAACTCCACAGGAGAGGGCATAACCTGCCAGGGAAGTTGAAGCAAAGAGGCAACAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACGTGCGTGCACCATCACCCGTCGAGGGCTCTCGGCGACCTCACCGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGTGAGAAGTGTTCAAAGCGATATGCTGTTAAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAGATGCGATTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGTGATGCTTTGGCTCAGGAAAGTAGCACAGTTACATCATCAATCATGAATAACAATTCCTTATTCCCTTCATTTCTTCGCCCTAATTTATTCCCACTCATCAAAACAGAAGAAGGCAAAGGCCACCCTTTTTTGATCTCTCATGATCAAATAATTCCCTCATCCAATAATGATAATAGTAATCCTACACTTCATTTTTCTACATTGGAAAATGGGCAACACCACCCTCTCTTGCTCCAACAAAACCCTAACCCTAACCCCACCAACCCTACTTCTACTCCCATCGGGTTCGGGTTGGTGGGTTCGGGTTCGGGTCCACTTGTTGGGTCTTGCCCTGCATGGGAGTCATCGTCGACGACGTCTCTTGCTGAAAATTCTTCTCCTCTTCCTCTTCCACCTTCTTCGTTTTTGCATCATATGATGAGTTTTGAGGAGGCTTCGTTTGAAGAAGCTCTCAATGGGATACTGATGAATGGGGTGGATAGAGACGTCGGTAAAGGTGGTGGCGGTGGCGGCGGCGGCAGCGACGGAGAGACGAGGGATTTTTTGGGGCTGAGAGCATTGGCTAGCTCAGATCACATCTTCCAGGATGAGATAAACGACATGTCGAATTTGAACTCTTCTTCACTGTTTGGTCTGCACCAGAATCATCAAACCCAGACGACATTTTGGCGTCATTAG 1287 47.16 MMMEGNLMVDENLSVLTTCASADQITRNETATDPLYSHHSSASTNQHRKRKRNLPGNPDPGAEVIALSPKALLATNRFICEICNKGFQRDQNLQLHRRGHNLPGKLKQRGNNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVKSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSTVTSSIMNNNSLFPSFLRPNLFPLIKTEEGKGHPFLISHDQIIPSSNNDNSNPTLHFSTLENGQHHPLLLQQNPNPNPTNPTSTPIGFGLVGSGSGPLVGSCPAWESSSTTSLAENSSPLPLPPSSFLHHMMSFEEASFEEALNGILMNGVDRDVGKGGGGGGGGSDGETRDFLGLRALASSDHIFQDEINDMSNLNSSSLFGLHQNHQTQTTFWRH 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2625387 2627783 - MC11g0336 Mch11g0417 679351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0417 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Mch11g0417 428 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Mch11g0417 428 SMART c2h2final6 155 175 IPR013087 -
Mch11g0417 428 SMART c2h2final6 78 100 IPR013087 -
Mch11g0417 428 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Mch11g0417 428 SUPERFAMILY beta-beta-alpha zinc fingers 77 175 IPR036236 -
Mch11g0417 428 Gene3D Classic Zinc Finger 61 130 - -
Mch11g0417 428 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
Mch11g0417 428 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Mch11g0417 428 MobiDBLite consensus disorder prediction 278 297 - -
Mch11g0417 428 Gene3D Classic Zinc Finger 148 215 - -
Mch11g0417 428 FunFam protein indeterminate-domain 12-like 57 126 - -
Mch11g0417 428 MobiDBLite consensus disorder prediction 30 62 - -
Mch11g0417 428 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Mch11g0417 428 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 288 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch11g0417 428 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0417 Mch-Chr11:2625387 Mch8g1263 Mch-Chr8:9149053 9.42E-105 dispersed
Mch11g0417 Mch-Chr11:2625387 Mch9g0247 Mch-Chr9:1857760 2.75E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42572 PF12171 zf-C2H2_jaz 6.10E-05 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0417 K25870 - csv:101215280 443.736