Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0417 | ATGATGATGGAAGGAAATTTAATGGTGGATGAGAATTTGTCTGTGTTGACTACTTGTGCATCTGCTGATCAAATAACAAGAAATGAAACTGCCACCGACCCTCTGTATTCTCATCACTCCTCTGCTTCTACAAATCAACATCGGAAGAGGAAACGGAATCTTCCTGGCAACCCAGACCCGGGAGCGGAAGTGATAGCCTTGTCTCCAAAAGCGCTTTTGGCGACGAACAGATTCATTTGCGAGATCTGCAACAAGGGATTTCAGAGAGATCAGAACCTTCAACTCCACAGGAGAGGGCATAACCTGCCAGGGAAGTTGAAGCAAAGAGGCAACAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAAGCGACGTGCGTGCACCATCACCCGTCGAGGGCTCTCGGCGACCTCACCGGGATCAAGAAGCACTTCTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGTGAGAAGTGTTCAAAGCGATATGCTGTTAAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAGATGCGATTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCATTTTGTGATGCTTTGGCTCAGGAAAGTAGCACAGTTACATCATCAATCATGAATAACAATTCCTTATTCCCTTCATTTCTTCGCCCTAATTTATTCCCACTCATCAAAACAGAAGAAGGCAAAGGCCACCCTTTTTTGATCTCTCATGATCAAATAATTCCCTCATCCAATAATGATAATAGTAATCCTACACTTCATTTTTCTACATTGGAAAATGGGCAACACCACCCTCTCTTGCTCCAACAAAACCCTAACCCTAACCCCACCAACCCTACTTCTACTCCCATCGGGTTCGGGTTGGTGGGTTCGGGTTCGGGTCCACTTGTTGGGTCTTGCCCTGCATGGGAGTCATCGTCGACGACGTCTCTTGCTGAAAATTCTTCTCCTCTTCCTCTTCCACCTTCTTCGTTTTTGCATCATATGATGAGTTTTGAGGAGGCTTCGTTTGAAGAAGCTCTCAATGGGATACTGATGAATGGGGTGGATAGAGACGTCGGTAAAGGTGGTGGCGGTGGCGGCGGCGGCAGCGACGGAGAGACGAGGGATTTTTTGGGGCTGAGAGCATTGGCTAGCTCAGATCACATCTTCCAGGATGAGATAAACGACATGTCGAATTTGAACTCTTCTTCACTGTTTGGTCTGCACCAGAATCATCAAACCCAGACGACATTTTGGCGTCATTAG | 1287 | 47.16 | MMMEGNLMVDENLSVLTTCASADQITRNETATDPLYSHHSSASTNQHRKRKRNLPGNPDPGAEVIALSPKALLATNRFICEICNKGFQRDQNLQLHRRGHNLPGKLKQRGNNKEVRKKVYVCPEATCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVKSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSTVTSSIMNNNSLFPSFLRPNLFPLIKTEEGKGHPFLISHDQIIPSSNNDNSNPTLHFSTLENGQHHPLLLQQNPNPNPTNPTSTPIGFGLVGSGSGPLVGSCPAWESSSTTSLAENSSPLPLPPSSFLHHMMSFEEASFEEALNGILMNGVDRDVGKGGGGGGGGSDGETRDFLGLRALASSDHIFQDEINDMSNLNSSSLFGLHQNHQTQTTFWRH | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2625387 | 2627783 | - | MC11g0336 | Mch11g0417 | 679351 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0417 | 428 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Mch11g0417 | 428 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 116 | 150 | - | - | |
Mch11g0417 | 428 | SMART | c2h2final6 | 155 | 175 | IPR013087 | - | |
Mch11g0417 | 428 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Mch11g0417 | 428 | Pfam | Zinc finger, C2H2 type | 78 | 100 | IPR013087 | - | |
Mch11g0417 | 428 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 175 | IPR036236 | - | |
Mch11g0417 | 428 | Gene3D | Classic Zinc Finger | 61 | 130 | - | - | |
Mch11g0417 | 428 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 154 | 178 | - | - | |
Mch11g0417 | 428 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Mch11g0417 | 428 | MobiDBLite | consensus disorder prediction | 278 | 297 | - | - | |
Mch11g0417 | 428 | Gene3D | Classic Zinc Finger | 148 | 215 | - | - | |
Mch11g0417 | 428 | FunFam | protein indeterminate-domain 12-like | 57 | 126 | - | - | |
Mch11g0417 | 428 | MobiDBLite | consensus disorder prediction | 30 | 62 | - | - | |
Mch11g0417 | 428 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 133 | 212 | - | - | |
Mch11g0417 | 428 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 40 | 288 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Mch11g0417 | 428 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 181 | 221 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0417 | Mch-Chr11:2625387 | Mch8g1263 | Mch-Chr8:9149053 | 9.42E-105 | dispersed | |
Mch11g0417 | Mch-Chr11:2625387 | Mch9g0247 | Mch-Chr9:1857760 | 2.75E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42572 | PF12171 | zf-C2H2_jaz | 6.10E-05 | CL0361 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0417 | K25870 | - | csv:101215280 | 443.736 |