Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0421 ATGCGAAGCTCTCGTTTGAACACTTTCACTAACTTCTCTCTCCACCACCCCACGAACTTCTTTTCAATTCTTTGGATTTCTGTATTTGAGACTAACATTTTCCCCTACCCAAAAAGCCTCGGAATTTTTTGTTTCCTCCAAAGTTTTCACTATCGATTGATACCATTTTTTCAGCTTCATTTATTGTTGGTGCTCTGTTTCTCCTCTGCTTTCATGGGGAGTTCTGGGAAATGGATGAAGGCTCTTATGGGGCACAGGAAGTCCGACAAAGAGGACAATGAGAAGTTGGGTAGTAAAGCTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGCTACAAAGGGCTTCATAAGGCAGCTTCTGAAGGCTCTAATTCGCCGCGGGCGGCTGATTCTTTTACCGCCGCCGTCGCCACCGTCCTCCGGGCTCCGCCCAAAAACTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATCCGAATCCAAACGGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTTCGGGGTCGTTTGGTGAGGAAGCAGGCGGCCGTGACGCTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGAGTCAGGGCTCGGCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTGCAGCAAATGCTCGACGAGCGTCACAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGCAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGTCAACACCTAGCTCGACATCGCAAATAAATGCTTCGATTTATGCTCTCAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGACTTGGTTGGAGAGGTGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCCTTGGAGGCCACTCCGCCTTCAAAGAGCTGTACGGAGTCTGTCGTTTCTAAACATTCCAAAGGTTCTGAACCAAGTCTGGTGAAAGTTAGAAAGAACAATGTATCGACCAGGATTTCTGCTAGACCTGCCTCAAGTGGACAAGCTCGTTCTTGTTCCAGCCCGAGTTCCGACTTCTGGTACGACGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCAGCCTCAGGGCACGCTTTCTCAGCTGCAGAAAGAACAGAGAACAGCAGTAACAGCAGGCCGAGTTACATGAACCTTACCGAGTCGACAAAGGCGAAGCAGAGAACAAGTAGTCACTTGTCGCACCGAGTTCAAAGGCAGTCCATGGATGAGTACCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGCGGATTCTAAGAGCAGTGCAGGCTCTGATTCTTCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACTCGACTGGATAAGAATGGAACTAAGCTAAGGTATTGA 1548 49.29 MRSSRLNTFTNFSLHHPTNFFSILWISVFETNIFPYPKSLGIFCFLQSFHYRLIPFFQLHLLLVLCFSSAFMGSSGKWMKALMGHRKSDKEDNEKLGSKAKKWRLWRSPSGDLSSAWKGYKGLHKAASEGSNSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQMLDERHSKADLLKQAEEGWCDSKGTLQDIKAKLQMRQDGAFKRERAIAYSLVQKQLKSTPSSTSQINASIYALKNYEFDKNNWGWTWLERWMAAKPWETRLMEQSRTDSLEATPPSKSCTESVVSKHSKGSEPSLVKVRKNNVSTRISARPASSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSAAERTENSSNSRPSYMNLTESTKAKQRTSSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRY 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2644375 2649913 - MC11g0339 Mch11g0421 679355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0421 515 PANTHER IQ-DOMAIN 5-RELATED 76 468 - -
Mch11g0421 515 MobiDBLite consensus disorder prediction 415 452 - -
Mch11g0421 515 FunFam IQ-domain 11 159 210 - -
Mch11g0421 515 MobiDBLite consensus disorder prediction 340 396 - -
Mch11g0421 515 MobiDBLite consensus disorder prediction 481 515 - -
Mch11g0421 515 ProSiteProfiles IQ motif profile. 184 211 - -
Mch11g0421 515 ProSiteProfiles IQ motif profile. 160 188 - -
Mch11g0421 515 SMART iq_5 159 181 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 SMART iq_5 182 203 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 MobiDBLite consensus disorder prediction 415 469 - -
Mch11g0421 515 Pfam IQ calmodulin-binding motif 184 201 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 Pfam IQ calmodulin-binding motif 162 181 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 MobiDBLite consensus disorder prediction 341 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0421 Mch-Chr11:2644375 Mch4g2077 Mch-Chr4:22941834 1.68E-30 dispersed
Mch3g1526 Mch-Chr3:17362685 Mch11g0421 Mch-Chr11:2644375 1.28E-12 transposed
Mch6g1311 Mch-Chr6:10866131 Mch11g0421 Mch-Chr11:2644375 3.00E-46 transposed
Mch11g0421 Mch-Chr11:2644375 Mch9g0244 Mch-Chr9:1837269 1.87E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0421 - - - 0.0