Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0421 ATGCGAAGCTCTCGTTTGAACACTTTCACTAACTTCTCTCTCCACCACCCCACGAACTTCTTTTCAATTCTTTGGATTTCTGTATTTGAGACTAACATTTTCCCCTACCCAAAAAGCCTCGGAATTTTTTGTTTCCTCCAAAGTTTTCACTATCGATTGATACCATTTTTTCAGCTTCATTTATTGTTGGTGCTCTGTTTCTCCTCTGCTTTCATGGGGAGTTCTGGGAAATGGATGAAGGCTCTTATGGGGCACAGGAAGTCCGACAAAGAGGACAATGAGAAGTTGGGTAGTAAAGCTAAGAAATGGAGGCTATGGAGGAGCCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGCTACAAAGGGCTTCATAAGGCAGCTTCTGAAGGCTCTAATTCGCCGCGGGCGGCTGATTCTTTTACCGCCGCCGTCGCCACCGTCCTCCGGGCTCCGCCCAAAAACTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATCCGAATCCAAACGGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTTCGGGGTCGTTTGGTGAGGAAGCAGGCGGCCGTGACGCTGAGGTGCATGCAGGCTCTGGTTCGAGTCCAAGCTCGAGTCAGGGCTCGGCGTGTGAGGATGTCGGTCGAGGGGCAGGCTGTGCAGCAAATGCTCGACGAGCGTCACAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGCAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGTCAACACCTAGCTCGACATCGCAAATAAATGCTTCGATTTATGCTCTCAAGAATTACGAGTTCGACAAGAACAATTGGGGATGGACTTGGTTGGAGAGGTGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCCTTGGAGGCCACTCCGCCTTCAAAGAGCTGTACGGAGTCTGTCGTTTCTAAACATTCCAAAGGTTCTGAACCAAGTCTGGTGAAAGTTAGAAAGAACAATGTATCGACCAGGATTTCTGCTAGACCTGCCTCAAGTGGACAAGCTCGTTCTTGTTCCAGCCCGAGTTCCGACTTCTGGTACGACGAGAGCTCTGCTTCATCTTCAATCTGCACGTCGACAACTCCAGCCTCAGGGCACGCTTTCTCAGCTGCAGAAAGAACAGAGAACAGCAGTAACAGCAGGCCGAGTTACATGAACCTTACCGAGTCGACAAAGGCGAAGCAGAGAACAAGTAGTCACTTGTCGCACCGAGTTCAAAGGCAGTCCATGGATGAGTACCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGCGGATTCTAAGAGCAGTGCAGGCTCTGATTCTTCAGTCAATCCCTTTAAGCCATTGATGCTGCCAACTCGACTGGATAAGAATGGAACTAAGCTAAGGTATTGA 1548 49.29 MRSSRLNTFTNFSLHHPTNFFSILWISVFETNIFPYPKSLGIFCFLQSFHYRLIPFFQLHLLLVLCFSSAFMGSSGKWMKALMGHRKSDKEDNEKLGSKAKKWRLWRSPSGDLSSAWKGYKGLHKAASEGSNSPRAADSFTAAVATVLRAPPKNFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQMLDERHSKADLLKQAEEGWCDSKGTLQDIKAKLQMRQDGAFKRERAIAYSLVQKQLKSTPSSTSQINASIYALKNYEFDKNNWGWTWLERWMAAKPWETRLMEQSRTDSLEATPPSKSCTESVVSKHSKGSEPSLVKVRKNNVSTRISARPASSGQARSCSSPSSDFWYDESSASSSICTSTTPASGHAFSAAERTENSSNSRPSYMNLTESTKAKQRTSSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRLDKNGTKLRY 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2644375 2649913 - MC11g0339 Mch11g0421 679355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0421 515 PANTHER IQ-DOMAIN 5-RELATED 76 468 - -
Mch11g0421 515 MobiDBLite consensus disorder prediction 415 452 - -
Mch11g0421 515 FunFam IQ-domain 11 159 210 - -
Mch11g0421 515 MobiDBLite consensus disorder prediction 340 396 - -
Mch11g0421 515 MobiDBLite consensus disorder prediction 481 515 - -
Mch11g0421 515 ProSiteProfiles IQ motif profile. 184 211 - -
Mch11g0421 515 ProSiteProfiles IQ motif profile. 160 188 - -
Mch11g0421 515 SMART iq_5 159 181 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 SMART iq_5 182 203 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 MobiDBLite consensus disorder prediction 415 469 - -
Mch11g0421 515 Pfam IQ calmodulin-binding motif 184 201 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 Pfam IQ calmodulin-binding motif 162 181 IPR000048 GO:0005515(InterPro)
Mch11g0421 515 MobiDBLite consensus disorder prediction 341 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0421 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0421 Mch-Chr11:2644375 Mch4g2077 Mch-Chr4:22941834 1.68E-30 dispersed
Mch3g1526 Mch-Chr3:17362685 Mch11g0421 Mch-Chr11:2644375 1.28E-12 transposed
Mch6g1311 Mch-Chr6:10866131 Mch11g0421 Mch-Chr11:2644375 3.00E-46 transposed
Mch11g0421 Mch-Chr11:2644375 Mch9g0244 Mch-Chr9:1837269 1.87E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39