Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0446 ATGGATGTGAACGGCAATAAACCTTTGAAAGCTGTTCGAAGAAGCTCGTCTCAGAAGGAAAGTGAAAATGGAGGCCAAGTGGTTGTAGAAATTAGCGGCGTAGTTCCTTCCAAAGAAACCAGAGACGAAAATGGCTGCTCTGTTCCGAGCCAGAACAGAGTAGTCGATTCTCAGAACAAAGGGCCGACGGATTCCAGCATTGGCTCTGCTAATAAACCCCCAAAAATCCCCAATTCCAGTGGAACCCTCATGCCCAGAAAATCTCTCAAAAGATCAATCCAATCCAAACCCAAATCCCGATTTGGGGAACAGCAGCCGTATTACATCGATTCGGATATGTTTGAAGAGGATCGGTTGTCGTTGAGAGAACAAATCGGTGCCACTTCCTCCAGAAGGGCCTCGCCTGGTCACAAATCGGCTCTCACCACGCCGAGGGCGCAAGCTGAGGAAGAAGACGAAGATGCAATCTGGAAGACAGAGCAGCTGAGCAAAGAGAAGCACAAGAAACTGAAAATGAAGACGTTGGTGAAGTGGGTTGGGGTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTCAACCGTTTGAGGAATTGCTTCCTCTGGGGTTTGGAGATTTGGAAATGGTGTTTGCTTGCAACTGTGATTTTGTGTGGAATGATTTTTACTAAATGGGTGATGAATGTGATTGTGTTTTTGATTGAGAGGAACTTTTTGCTCAAGAAGAAAGTTCTTTATTTTGTTCACGGATTGAAGAAGATTGTCCAAGTGACACTTTGGTTGACGTTGGTTCTTGCTACCTGGGCGTCGTTGTTCGATCGGAGTAACCATAGGGTTTTGAGATCAAAGACCGCCGGGAAGATTTTGGATGCTGGGACTTGGACTCTGGTATCCCTTCTAATAGGGGCGTTTTTGTGGTTGGTGAAAACATTGTTGCTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACCGAATCCAGGAATCGATATTCCATCATCATGTTCTACAGACCCTCTCGAGGCCTCCATTAATGGGGGTGGCTGAATGTGCTGCCAGTGCCAAGTCCAGCAGTGGTCGACTGAGTTTGAAGGGTAAGAAGTCAGACCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAACGGGAGAAGGTTTCTGCTTGGACCATGAAGGTGTTGGTTGATGCAGTTACTAGTTCGGAGTTGTCGATCTCACAATTACTCGACGAAAGCTACCAAAATGGTGGAGCTGAAGTGGCGGATAGTGATATCACCGATGAGATGGAAGTTGCCCGAGCTGCGGCCTACAGGATCTTCAACAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAAGAAGATCTTCTGAAATTTATGATCAAAGAAGAAGTGGATCTTGTGTTACCACTCTTTGAGGTAGCTGATACAAGGCAGATTGATAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACGCTAGCACATGCCTTGAAAGACACTAAAACTGCTGTGAAGCAACTGAATAATTTAGTAACAGCACTTCTTATAATAGTAACAGCGGTTGTTTGGCTTCTGTTGATGGAAATTGCTACCACCAAAGTACTTGTCTTCCTTCTGTCTCAACTTGCAGTGGCAGCCTTCATGTTCGGAAACACGTGCAAGACTACGTTTGAAGCTCTAATCTTCGTGTTCGTCATGCATCCATTTGATGTTGGGGACCGTTGTGTTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAGCAACGAGAAGGTGTACTATCCAAACTCAGTTCTGTCAACTAAGCCCATCACCAATTACTACAGAAGTCCAGACATGAGTGATACTGTAGAGTTCTCAATCAGTTTCACGACGCCGTTGGAGAGGATCGGGGCCATGAAGGAGAGAATAAAGAGGTATTTGGAGAAGAATTCACAACATTGGCATCCAAATCACGATGTGGTGGTGAAGGAGATCGAAGATGTGAATAAGATAAAGATCGCTCTTTACGTGAACCACACCTTGAATTTTCAAGAGTGGGCGGAGAAGAATCGACGCAGAACCGAGCTGGTGATGGAGTTGAAGAAAATTTTTGAAGAACTGAATATCAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCGGTCGAAGCGCACTGA 2226 45.06 MDVNGNKPLKAVRRSSSQKESENGGQVVVEISGVVPSKETRDENGCSVPSQNRVVDSQNKGPTDSSIGSANKPPKIPNSSGTLMPRKSLKRSIQSKPKSRFGEQQPYYIDSDMFEEDRLSLREQIGATSSRRASPGHKSALTTPRAQAEEEDEDAIWKTEQLSKEKHKKLKMKTLVKWVGVFCIIGCLVASLTVNRLRNCFLWGLEIWKWCLLATVILCGMIFTKWVMNVIVFLIERNFLLKKKVLYFVHGLKKIVQVTLWLTLVLATWASLFDRSNHRVLRSKTAGKILDAGTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMGVAECAASAKSSSGRLSLKGKKSDHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSELSISQLLDESYQNGGAEVADSDITDEMEVARAAAYRIFNNVALPGNKFIEEEDLLKFMIKEEVDLVLPLFEVADTRQIDRKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVTALLIIVTAVVWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTTFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLSNEKVYYPNSVLSTKPITNYYRSPDMSDTVEFSISFTTPLERIGAMKERIKRYLEKNSQHWHPNHDVVVKEIEDVNKIKIALYVNHTLNFQEWAEKNRRRTELVMELKKIFEELNINYNLLPQTVHLFPVEAH 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2792771 2796722 + MC11g0359 Mch11g0446 679380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0446 741 SUPERFAMILY Sm-like ribonucleoproteins 568 628 IPR010920 -
Mch11g0446 741 PIRSF Memb_At2g17000 4 739 IPR016688 -
Mch11g0446 741 MobiDBLite consensus disorder prediction 43 89 - -
Mch11g0446 741 MobiDBLite consensus disorder prediction 126 141 - -
Mch11g0446 741 FunFam Predicted mechanosensitive ion channel 579 628 - -
Mch11g0446 741 MobiDBLite consensus disorder prediction 1 107 - -
Mch11g0446 741 MobiDBLite consensus disorder prediction 126 153 - -
Mch11g0446 741 Gene3D - 579 628 IPR023408 -
Mch11g0446 741 Pfam Mechanosensitive ion channel, beta-domain 572 629 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g0446 741 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 45 735 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0446 Mch-Chr11:2792771 Mch7g0818 Mch-Chr7:12790702 2.92E-158 dispersed
Mch11g0446 Mch-Chr11:2792771 Mch6g0955 Mch-Chr6:6757565 2.53E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0446 K22048 - csv:101217197 1046.96