Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0446 ATGGATGTGAACGGCAATAAACCTTTGAAAGCTGTTCGAAGAAGCTCGTCTCAGAAGGAAAGTGAAAATGGAGGCCAAGTGGTTGTAGAAATTAGCGGCGTAGTTCCTTCCAAAGAAACCAGAGACGAAAATGGCTGCTCTGTTCCGAGCCAGAACAGAGTAGTCGATTCTCAGAACAAAGGGCCGACGGATTCCAGCATTGGCTCTGCTAATAAACCCCCAAAAATCCCCAATTCCAGTGGAACCCTCATGCCCAGAAAATCTCTCAAAAGATCAATCCAATCCAAACCCAAATCCCGATTTGGGGAACAGCAGCCGTATTACATCGATTCGGATATGTTTGAAGAGGATCGGTTGTCGTTGAGAGAACAAATCGGTGCCACTTCCTCCAGAAGGGCCTCGCCTGGTCACAAATCGGCTCTCACCACGCCGAGGGCGCAAGCTGAGGAAGAAGACGAAGATGCAATCTGGAAGACAGAGCAGCTGAGCAAAGAGAAGCACAAGAAACTGAAAATGAAGACGTTGGTGAAGTGGGTTGGGGTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTCAACCGTTTGAGGAATTGCTTCCTCTGGGGTTTGGAGATTTGGAAATGGTGTTTGCTTGCAACTGTGATTTTGTGTGGAATGATTTTTACTAAATGGGTGATGAATGTGATTGTGTTTTTGATTGAGAGGAACTTTTTGCTCAAGAAGAAAGTTCTTTATTTTGTTCACGGATTGAAGAAGATTGTCCAAGTGACACTTTGGTTGACGTTGGTTCTTGCTACCTGGGCGTCGTTGTTCGATCGGAGTAACCATAGGGTTTTGAGATCAAAGACCGCCGGGAAGATTTTGGATGCTGGGACTTGGACTCTGGTATCCCTTCTAATAGGGGCGTTTTTGTGGTTGGTGAAAACATTGTTGCTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACCGAATCCAGGAATCGATATTCCATCATCATGTTCTACAGACCCTCTCGAGGCCTCCATTAATGGGGGTGGCTGAATGTGCTGCCAGTGCCAAGTCCAGCAGTGGTCGACTGAGTTTGAAGGGTAAGAAGTCAGACCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAACGGGAGAAGGTTTCTGCTTGGACCATGAAGGTGTTGGTTGATGCAGTTACTAGTTCGGAGTTGTCGATCTCACAATTACTCGACGAAAGCTACCAAAATGGTGGAGCTGAAGTGGCGGATAGTGATATCACCGATGAGATGGAAGTTGCCCGAGCTGCGGCCTACAGGATCTTCAACAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAAGAAGATCTTCTGAAATTTATGATCAAAGAAGAAGTGGATCTTGTGTTACCACTCTTTGAGGTAGCTGATACAAGGCAGATTGATAGGAAAGCTCTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACGCTAGCACATGCCTTGAAAGACACTAAAACTGCTGTGAAGCAACTGAATAATTTAGTAACAGCACTTCTTATAATAGTAACAGCGGTTGTTTGGCTTCTGTTGATGGAAATTGCTACCACCAAAGTACTTGTCTTCCTTCTGTCTCAACTTGCAGTGGCAGCCTTCATGTTCGGAAACACGTGCAAGACTACGTTTGAAGCTCTAATCTTCGTGTTCGTCATGCATCCATTTGATGTTGGGGACCGTTGTGTTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAGCAACGAGAAGGTGTACTATCCAAACTCAGTTCTGTCAACTAAGCCCATCACCAATTACTACAGAAGTCCAGACATGAGTGATACTGTAGAGTTCTCAATCAGTTTCACGACGCCGTTGGAGAGGATCGGGGCCATGAAGGAGAGAATAAAGAGGTATTTGGAGAAGAATTCACAACATTGGCATCCAAATCACGATGTGGTGGTGAAGGAGATCGAAGATGTGAATAAGATAAAGATCGCTCTTTACGTGAACCACACCTTGAATTTTCAAGAGTGGGCGGAGAAGAATCGACGCAGAACCGAGCTGGTGATGGAGTTGAAGAAAATTTTTGAAGAACTGAATATCAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCGGTCGAAGCGCACTGA 2226 45.06 MDVNGNKPLKAVRRSSSQKESENGGQVVVEISGVVPSKETRDENGCSVPSQNRVVDSQNKGPTDSSIGSANKPPKIPNSSGTLMPRKSLKRSIQSKPKSRFGEQQPYYIDSDMFEEDRLSLREQIGATSSRRASPGHKSALTTPRAQAEEEDEDAIWKTEQLSKEKHKKLKMKTLVKWVGVFCIIGCLVASLTVNRLRNCFLWGLEIWKWCLLATVILCGMIFTKWVMNVIVFLIERNFLLKKKVLYFVHGLKKIVQVTLWLTLVLATWASLFDRSNHRVLRSKTAGKILDAGTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLMGVAECAASAKSSSGRLSLKGKKSDHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSELSISQLLDESYQNGGAEVADSDITDEMEVARAAAYRIFNNVALPGNKFIEEEDLLKFMIKEEVDLVLPLFEVADTRQIDRKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVTALLIIVTAVVWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTTFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLSNEKVYYPNSVLSTKPITNYYRSPDMSDTVEFSISFTTPLERIGAMKERIKRYLEKNSQHWHPNHDVVVKEIEDVNKIKIALYVNHTLNFQEWAEKNRRRTELVMELKKIFEELNINYNLLPQTVHLFPVEAH 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2792771 2796722 + MC11g0359 Mch11g0446 679380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0446 741 SUPERFAMILY Sm-like ribonucleoproteins 568 628 IPR010920 -
Mch11g0446 741 PIRSF Memb_At2g17000 4 739 IPR016688 -
Mch11g0446 741 MobiDBLite consensus disorder prediction 43 89 - -
Mch11g0446 741 MobiDBLite consensus disorder prediction 126 141 - -
Mch11g0446 741 FunFam Predicted mechanosensitive ion channel 579 628 - -
Mch11g0446 741 MobiDBLite consensus disorder prediction 1 107 - -
Mch11g0446 741 MobiDBLite consensus disorder prediction 126 153 - -
Mch11g0446 741 Gene3D - 579 628 IPR023408 -
Mch11g0446 741 Pfam Mechanosensitive ion channel, beta-domain 572 629 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g0446 741 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 45 735 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0446 K22048 - - csv:101217197 1046.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0446 Mch-Chr11:2792771 Mch7g0818 Mch-Chr7:12790702 2.92E-158 dispersed
Mch11g0446 Mch-Chr11:2792771 Mch6g0955 Mch-Chr6:6757565 2.53E-207 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57