Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0451 TCGTTGTTAAAGTTGGGGATTTCTGGGATTATTACATCACCACTAGCAACAACAGAAGCATCCCAGGGTTCGTGTTCGCACCTTGCCTTTGCGTCCAAGTGTATGACGATTTGGTGCTGCTTATGCTTCACCGTTGGAGAAGAAGACGAAAGGGAAGAACTGAAAGGTGAGATGAAGCCCATGCGTGAGGATGATTTTGAGAACCCGGATGACCCTGATCACATTGTGGGAAATGGCGGGGATTTTGAAGGGGGTGATCGGGTTGCGATTGCTGTGGATGGGTCTGAGCGTCATGATGGTGATCGACTGAGGTTGTTTGAGGATATGGTTAGGGCAATGCACGACGGCGGGGATGCTGGGGCTCAATGGGACGATGGGCTGCGCGGCGGTGCGGGTATCAACCCTTGGAATTTGTCTTTTGGAATTAAGCATCAGTCCGAGGGGGGAGAGAGTAGTAGCGCCTCGGCTTTGGCCTTGCCATCTGCGGCTGCTACAGTCGAGACTTCTAATGAAGAGCGCGATCGCGATGCCCACCACAAGCGCGCCAAAGTTCACTCCAAATTCAATGAGTGCGCCTTTTCAACTCCTTGGCCTTTGGGCGCTGGAAATCCTGCGAGAGATTATGATTTTTGTCACGGATCATCTTCAATTATGACTAGGAATGAGTTTTTCTACCATGCTTCTACATCAAACAGAGTTGATGATGGCGACGATTTTGATTCTAGTTTTGCTAAAGATGATGAGATAAATGAGAATGATGCCTGTAAATCAGAGGAATTTGAAGTACGGATGGATCTTACAGATGATTTACTGCATATGGTTTTCTCTTTCTTGGATCACATCAATCTTTGTCGAGCTGCTATAGTCTGCAGGCAGTGGCGAGCTGCTAGTGCTCATGAAGATTTCTGGAGGTGTTTGAACTTTGAAAATAGGAAAATATCCATGGAACAATTTGAGGATATGTGTGGAAGATATCCAAATGCCACAGAGGTAAATATATCTGGTGTTCCTGCCGTTCACTTGCTTGCTATGAAAGCAGTTTATTCTTTAAGAAATTTGGAGGTTTTAACTTTGGGGAAAGGACAACTGGGCGACACCTTTTTTCACGCCTTGGCAGATTGCCATTTTCTGAAGAGCCTGACGGTCAATGATTCTACGCTAGTTAATGTTACACAGGAGATACCTATAAGCCATGATAGACTGCGTCATCTTCATCTTACTAAATGTCGTGTTATACGCATATCTGTTAGATGTCCACAACTTGAAACATTGTCTTTGAAGCGCAGTAACATGGCACAGGCTGTTCTTAATTGCCCTCTTCTCCATGACCTGGATATAGGCTCTTGCCACAAGCTCTCAGATGCTGCAATTCGCTCAGCAGCTATTTCGTGCCCACAATTGGAATCTCTTGACATGTCTAATTGTTCCTGTGTCAGTGATGAGACATTACGCGAAATAGCCTCAGCCTGCCAGAATCTCCAACTTCTGAATGCATCATACTGCCCAAATATATCTTTGGAGTCTGTAAGACTGTCGATGCTGACGGTGCTTAAGCTTCACAGCTGTGAGGGCATCACTTCAGCTTCAATGACTGCAATATCTCATAGTTATAAGCTGAAGGTTTTGGAGCTTGATAATTGCAGTCTTTTGACTTCTGTGTCACTGGATCTTCCATGTTTGCAGAATATTAGACTGGTCCACTGCCGCAAATTCTCTGATTTGAGCTTACAGAGTGTTAAGTTATCATCCATAATGGTCTCTAATTGTCCAGCACTTCACCGGATCAACATCACTTCCAATTTACTTCAAAAATTAATGTTGAAGAAACAGGAGAGCTTGGCTAAGTTGGCTTTGCAGTGTCCCGGTCTGCAAGATGTGGACCTCACAGACTGCGAATCTCTAACAAATTCTGTTTGTGAGGTTTTTAGTGATGGTGGTGGATGTCCTATGTTGAAATCACTTGTTCTTGATAACTGCGAGAGTTTAACTGCTGTTCGATTCTGTAGTAGTTCTTTAGGAAGTCTTTCCCTTGTTGGTTGCCGGGCGATCACTTCACTCGAACTTAAATGCCCTAATCTCGAACAAGTTTCTCTTGATGGCTGCGATCATCTAGAAAGAGCATCATTTTCCCCTGTTGGTCTGCGGTCACTAAACCTTGGAATTTGTCCAAAATTGACTGAATTAAGACTTGAGGCTCCTCGTATGGATTTACTCGAGTTGAAAGGTTGTGGTGGATTGTCTGAGGCAGCCATCAATTGTCCACGTCTAACATCATTGGATGCTTCCTTTTGTGGTCAACTGAAAGATGAGTGCTTGTCTGCAACTACTGCCTCGTGTCCACAGATTGAGTCACTAATACTGATGTCATGTCCTTCGGTTGGTTCAGAGGGACTTTACTCTTTGCGATGCCTTCTGAAGTTGGTTGTGCTTGATTTATCATATACCTTTTTGATGAGTTTGCAGCCAGTCTTCGAGTCTTGTGTACAACTAAAGGTATTGAAACTACAAGCATGCAAATATTTAACCGACTCATCGCTGGAGCCCCTTTATAAGGAAGGTGCTCTTCCAGCTCTTCAGGAGTTAGACTTATCTTACGGGTCACTTTGTCAATCTGCCATTGAGGAACTTCTTGCTTGTTGCACACACCTGACTCATGTGAGCTTAAATGGCTGTGTGAACATGCATGATCTAAACTGGGGTTGTAGCACTGGACATCTTTCTTTGTCCGGCATCCCGCTTCCTCTTGGTCAGGCCACTATTGACGATATTGAGGAACCGGTTGCACAGCCGAACCGTTTATTACAGAATCTTAACTGTGTAGGTTGTCAGAGTATTAGGAAAGTTCTCATTCCTCCAGCAGCACGCTGTCTCCATTTATCATCATTGAACCTATCTCTGTCTTCAAATCTCAAAGAAGTCGACGTTTCTTGTCTCAATCTATGCTTTCTTAATTTGAGTAATTGTTGCTCTCTGGAAGTTTTGAGACTTGACTGCCCGAGACTGACCAGTCTCTTTCTCCAGTCTTGCAACATTGAGGAAGAAGCAGTTGAAGCCGCGATATCGAAATGTAGTATGCTCGAGACACTAGACGTCCGCTTTTGTCCGAAGATCTCGTCGATTAGCATGGTACAACTGCGTATTGCTTGCCCGAGTTTGAAGCGGATCTTCAGCAGTCTGTCTCCAACGTGA 3189 44.56 SLLKLGISGIITSPLATTEASQGSCSHLAFASKCMTIWCCLCFTVGEEDEREELKGEMKPMREDDFENPDDPDHIVGNGGDFEGGDRVAIAVDGSERHDGDRLRLFEDMVRAMHDGGDAGAQWDDGLRGGAGINPWNLSFGIKHQSEGGESSSASALALPSAAATVETSNEERDRDAHHKRAKVHSKFNECAFSTPWPLGAGNPARDYDFCHGSSSIMTRNEFFYHASTSNRVDDGDDFDSSFAKDDEINENDACKSEEFEVRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASAHEDFWRCLNFENRKISMEQFEDMCGRYPNATEVNISGVPAVHLLAMKAVYSLRNLEVLTLGKGQLGDTFFHALADCHFLKSLTVNDSTLVNVTQEIPISHDRLRHLHLTKCRVIRISVRCPQLETLSLKRSNMAQAVLNCPLLHDLDIGSCHKLSDAAIRSAAISCPQLESLDMSNCSCVSDETLREIASACQNLQLLNASYCPNISLESVRLSMLTVLKLHSCEGITSASMTAISHSYKLKVLELDNCSLLTSVSLDLPCLQNIRLVHCRKFSDLSLQSVKLSSIMVSNCPALHRINITSNLLQKLMLKKQESLAKLALQCPGLQDVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCESLTAVRFCSSSLGSLSLVGCRAITSLELKCPNLEQVSLDGCDHLERASFSPVGLRSLNLGICPKLTELRLEAPRMDLLELKGCGGLSEAAINCPRLTSLDASFCGQLKDECLSATTASCPQIESLILMSCPSVGSEGLYSLRCLLKLVVLDLSYTFLMSLQPVFESCVQLKVLKLQACKYLTDSSLEPLYKEGALPALQELDLSYGSLCQSAIEELLACCTHLTHVSLNGCVNMHDLNWGCSTGHLSLSGIPLPLGQATIDDIEEPVAQPNRLLQNLNCVGCQSIRKVLIPPAARCLHLSSLNLSLSSNLKEVDVSCLNLCFLNLSNCCSLEVLRLDCPRLTSLFLQSCNIEEEAVEAAISKCSMLETLDVRFCPKISSISMVQLRIACPSLKRIFSSLSPT 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2826063 2834349 + MC11g0363 Mch11g0451 679385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0451 1062 SMART LRR_CC_2 753 778 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 690 720 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 998 1022 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 490 515 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 438 463 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 880 911 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 620 645 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 1023 1048 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 557 582 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 827 852 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 779 804 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 648 686 IPR006553 -
Mch11g0451 1062 SMART LRR_CC_2 464 489 IPR006553 -
Mch11g0451 1062 MobiDBLite consensus disorder prediction 145 167 - -
Mch11g0451 1062 Gene3D Ribonuclease Inhibitor 432 579 IPR032675 -
Mch11g0451 1062 Gene3D Ribonuclease Inhibitor 580 732 IPR032675 -
Mch11g0451 1062 Gene3D Ribonuclease Inhibitor 903 1059 IPR032675 -
Mch11g0451 1062 SUPERFAMILY F-box domain 264 314 IPR036047 GO:0005515(InterPro)
Mch11g0451 1062 Gene3D - 262 303 - -
Mch11g0451 1062 PANTHER OS10G0396666 PROTEIN 248 1056 - -
Mch11g0451 1062 SMART fbox_2 266 306 IPR001810 GO:0005515(InterPro)
Mch11g0451 1062 FunFam F-box/LRR-repeat protein 15 258 508 - -
Mch11g0451 1062 FunFam F-box/LRR-repeat protein 15 820 905 - -
Mch11g0451 1062 ProSiteProfiles F-box domain profile. 260 306 IPR001810 GO:0005515(InterPro)
Mch11g0451 1062 FunFam F-box/LRR-repeat protein 15 isoform C 917 1058 - -
Mch11g0451 1062 SUPERFAMILY L domain-like 746 1056 - -
Mch11g0451 1062 Gene3D Ribonuclease Inhibitor 821 902 IPR032675 -
Mch11g0451 1062 Gene3D Ribonuclease Inhibitor 741 820 IPR032675 -
Mch11g0451 1062 MobiDBLite consensus disorder prediction 145 178 - -
Mch11g0451 1062 Pfam F-box-like 268 308 IPR001810 GO:0005515(InterPro)
Mch11g0451 1062 SUPERFAMILY L domain-like 401 731 - -
Mch11g0451 1062 Gene3D Ribonuclease Inhibitor 304 431 IPR032675 -
Mch11g0451 1062 CDD F-box_FBXO41 268 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0451 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42