Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0459 ATGGGTATGAAGAGGAAAATGGCGTGGAAATCGATGATCGTGCCGAGTTGTTACAAGGCGGCGCACCGCCGGCTGTCGGATTCCGACGAGCGGCGGCGGGTTACGAAGAAAAGCTCGTCGTCGCAGAGGCTGTCGCTGTCGGACGCCAGCAATCCGAGCTCGCCGCTGTCCATCGACGATCTCTCGAATTCCCTCGTCGGACCGAAGCTTCACATATTCTCATTTGCCGAGCTCCGGACCATTACCCACAATTTCGCCGCCGCCAATTTGCTCGGAGAAGGCGGGTTCGGTCCGGTCTACAAAGGCTTCGTCGACGATAAGATCAAACCCGGTTTAGAACCTCAGCCGGTCGCCGTCAAGTTGCTCGACCTCGACGGATCTCAAGGCCATAAAGAATGGCTGGCAGAGGTGATAATTCTGGGGCAAATGAGGCATCAAAATCTGGTAAAACTAATCGGTTACTGCTGGGAAAAAGAATACAGACTTTTGGTTTATGAGTATATGGCCAGAGGCAGTTTAGAGAACCAGCTCTTCAGAAAATATTCAGCTGCGCTGCCTTGGTCAACGAGGATGAAAATTGCTTTAGAAGCAGCCAAAGGCCTTCAATTCCTCCACGAAGCCGATCCCCCCGTTATATTTAGAGATTTCAAAACCTCCAATATTCTCTTGGATTCTGATTATACTACAAAGTTGTCGGACCTTGGGCTAGCTAAAGATGGGGTGGATTGCGAAGACTTACAAGATATGTCTTGTATTATGGGGACTCAAGGTTACGCCGCTCCAGAATACGTCAAATCTGGACATTTGACGACGATGAGTGACGTGTACAGCTACGGCGTGGTGCTGCTGGAGCTGCTGACGGGGAAGCCGTCGATGGACCGGAAGACGGGGGAGTTTCTAGTGGACTGGGCGAGGCCGCTTCTCAAGGACTCGAGACGCCTCTTCCGAGTCATGGACCCGCGGCTCGAGGGGCTCTACTCCGCCGACGCCGCCCGCAAGGCCGCCGCCTTGGCCTACAAATGCTTGAGCCGGACCCCCAAGCGCCGCCCGCCCGTCACAGAAGTCGTTAACGCGTTGAAGTGTCTGCAGGACTTTAACGACGTCTTCACGGCGCCGTTTGTGTACGTGGTGGAGGACTGCGCCGGGGAGGAAGGGAAGAAGGGGAGAAATGAGAGGGTTATTGAAGGAAGTGGGCTTGGGCTGGGCCTTAGTTGGAAAAATTGGAGGCCCATATCTGTATGA 1242 54.03 MGMKRKMAWKSMIVPSCYKAAHRRLSDSDERRRVTKKSSSSQRLSLSDASNPSSPLSIDDLSNSLVGPKLHIFSFAELRTITHNFAAANLLGEGGFGPVYKGFVDDKIKPGLEPQPVAVKLLDLDGSQGHKEWLAEVIILGQMRHQNLVKLIGYCWEKEYRLLVYEYMARGSLENQLFRKYSAALPWSTRMKIALEAAKGLQFLHEADPPVIFRDFKTSNILLDSDYTTKLSDLGLAKDGVDCEDLQDMSCIMGTQGYAAPEYVKSGHLTTMSDVYSYGVVLLELLTGKPSMDRKTGEFLVDWARPLLKDSRRLFRVMDPRLEGLYSADAARKAAALAYKCLSRTPKRRPPVTEVVNALKCLQDFNDVFTAPFVYVVEDCAGEEGKKGRNERVIEGSGLGLGLSWKNWRPISV 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2900962 2903610 + MC11g_new0090 Mch11g0459 679393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0459 413 MobiDBLite consensus disorder prediction 39 55 - -
Mch11g0459 413 Pfam Protein kinase domain 88 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0459 413 SUPERFAMILY Protein kinase-like (PK-like) 63 359 IPR011009 -
Mch11g0459 413 Gene3D Transferase(Phosphotransferase) domain 1 168 371 - -
Mch11g0459 413 MobiDBLite consensus disorder prediction 24 55 - -
Mch11g0459 413 FunFam Serine/threonine-protein kinase BIK1 52 167 - -
Mch11g0459 413 ProSiteProfiles Protein kinase domain profile. 85 374 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0459 413 PANTHER OS01G0588500 PROTEIN-RELATED 61 363 IPR050823 -
Mch11g0459 413 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 168 369 - -
Mch11g0459 413 Gene3D Phosphorylase Kinase; domain 1 59 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0459 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0459 Mch-Chr11:2900962 Mch8g3249 Mch-Chr8:34453422 5.67E-139 dispersed
Mch11g0459 Mch-Chr11:2900962 Mch6g0978 Mch-Chr6:6907427 2.02E-154 wgd
Mch11g0459 Mch-Chr11:2900962 Mch9g0216 Mch-Chr9:1630856 1.93E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000600 4 3 3 2 3 0 5 0 0 3 3 0 5 4 0 5 0 0 5 0 3 0 1 0 0 3 1 0 0 3 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77048 PF00069 Pkinase 7.70E-45 CL0016 Mch PK