Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0470 ATGGAATCAGAGGATTCAGTGAGATTGAGATTGGAGGAATTGCACAAAGACTTGGGGAAGAAGCAGAAATTCGAGGAATCAGTTTCCACCATCGTTTCGCTTCTTCGAGATCGCTATCCTACTGCTTCTCCTTCGCTACGCAAATCGTTCTACTCCGTAATATGCCGAGCTGCGACAGTTCTGAAGACGAGGTTTACAGCCCCAGGGTTTTGGCTTGCTGGTCTCAAGCTTTTCGAGTTTTCTTTGACTCTGCTTTCTGATCATTCTGAGAGACAGCACCTGCAGGCTTGCGTAGCTCAGGCCAAGGAAATTCTGCACCAAATTGACAATCCATCTCAGCCTCCACAAAGTTCTTCATCGAATGGAGGCTATCTTTTTGAGGGCCATCTCACCGTTGATCCGGAACCGCCGCAGCCTCAGTGGCTGGTGCAGTCAAACCTCTTGTCGGCCGCTGCAGCTACGCTATTGAATGCTGAATCTTCTCAAGCTCCGGCTGAGAACAACAACACTTCTGAGAACGCTGCTAATATTCTTCAAGCACTTATTGAAAATATAGATAGTGTCGTAGATGAGTTTATGGACACGGCTAGCGGACCGCCAAAAGTCCCTCCTGCGAGTAAAGATGTTGTCGCAAAACTTCCTGTAATTACTGTAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTAGAATGTGCCATTTGCAGGGAAAACTTAGCTGTTGATGATAAGATGCAGGAATTGCCTTGCAAGCACACATTCCACCCACCTTGTTTGAAGCCGTGGCTGGATGAGCATAACTCTTGCCCGATCTGTCGCCATGAATTACCCACTGACGACCATGCTTACGAGAGCTGGAAGGAGCGAGAGAAAGAGGCCGAAGAAGAGAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATTTATGTATATTTGA 939 47.39 MESEDSVRLRLEELHKDLGKKQKFEESVSTIVSLLRDRYPTASPSLRKSFYSVICRAATVLKTRFTAPGFWLAGLKLFEFSLTLLSDHSERQHLQACVAQAKEILHQIDNPSQPPQSSSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLSAAAATLLNAESSQAPAENNNTSENAANILQALIENIDSVVDEFMDTASGPPKVPPASKDVVAKLPVITVTEEVLAKLGRDVECAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEFMYI 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2977188 2979624 - MC11g0377 Mch11g0470 679404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0470 312 Coils Coil 283 303 - -
Mch11g0470 312 Pfam Ring finger domain 231 273 IPR001841 -
Mch11g0470 312 SUPERFAMILY RING/U-box 226 279 - -
Mch11g0470 312 ProSiteProfiles Zinc finger RING-type profile. 232 273 IPR001841 -
Mch11g0470 312 SMART ring_2 232 272 IPR001841 -
Mch11g0470 312 CDD RING-H2_RNF126-like 231 273 - -
Mch11g0470 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 279 IPR013083 -
Mch11g0470 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 278 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Mch11g0470 312 MobiDBLite consensus disorder prediction 109 130 - -
Mch11g0470 312 MobiDBLite consensus disorder prediction 109 125 - -
Mch11g0470 312 FunFam E3 ubiquitin-protein ligase RNF181 193 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0470 Mch-Chr11:2977188 Mch4g1636 Mch-Chr4:19566607 1.89E-24 dispersed
Mch11g0470 Mch-Chr11:2977188 Mch9g0503 Mch-Chr9:3712614 1.73E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0470 K16274 - cit:102628995 428.713