Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0473 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGACATCGAAGTCCTTCCTTCTATGTGGCCCGAGGACGTTGGACCTGATGTTAGAAAGCAGTTCAATGTCGAAAGGCCAGGAATAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCAACAATCGTTGATTTCAAGAGACTTATAGAGTTAACCAACTATACTGAGAAAGGATCTTCTCAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTCAAAGAAGAACTCGACATCCTAAGCAAGCAGAGGAAAGAAGTCGAGCTCAAGAAATTGAAGATATTAGAGGAGCATCTTTTCGAGGAAGAAAGATATGGTGGCGATAAACGTCCAATCTCTATATTGGAAGAATCTTGTGACATATGGCAAGATATTCCGAGGAGAAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAGCGAACCGTGGATCTGGAAAAATTATTGGAAGCTAGTCTACAGCGAGAGCAAATGCTTGCAGAGAAACTTCAGGAAAATATAAAAAATATTGAAAAGCAGTCCTCACCAGTCGAGGAATTGTCACAGATTCTGAAAAGAGCCGACAACTTTTTGCATTTCGTTCTACAGAATGCACCAGTCGTTTTTGGTCATCAGGACAAAGAATTGCGCTATCGATTTATCTACAATCATTTTCCAAGTTTGGAGGAAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTAGTGGCGCTGGTGTGAAGGAATCCCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTGCCTGCAAAGAGGGAAATACAGTTCGATACAGAATTATTTGGGCTGAAGACCTTTCTGATTTACGTTGAACCTGTCTTTAGCAAGGCGGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGCGAGGAGATAGCAGTACAAAAGGCGAAGGAATCAGAACTGAACAAAACAATCCATATTACAGAGGAGACAATGCGGGCAAAGCAAATGCTAGCAACCATGTCGCATGAAATTAGATCTCCGCTTTCTGGGGTAGTTAGTATGGCTGAAATTCTGTCCACCACAAAACTTGATCGGGAACAACGACATCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTCATAAACGATATCTTGGATCTTTCTAAAGTTGAATCAGGAGTAATGAGGTTGGAAGCTACAAAGTTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGGCGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTCGGATTCGGCAAATCCTCACCAACCTGATCAGCAACGCAATCAAGTTCACTCCTCAAGGGAAGGTTGGAATCAATCTTTATGTGTTACCTTATCCACCTACTGGGAAAGGAGAAGAATGCCATAAGAAATCAACGGCTAATAACTCAACAGTTTCAGTAAATGGTGTGCAAGAAGGAACATGTCTTCCGTCCCCTCAGAATGGCTTGCGTGGCCAAAGCCACGCTGACAGAAATCATTTACATTGTGAATCGGGTAAAAAGAGCGAAGCCACGGTGAACGGAAATAGAGAAAACAACTCTTGTTCACCCGAAACGACAGTATGGATACGCTGTGATGTATACGACACAGGAATCGGAATAAAAGAAGAGGCATTACCAACCCTTTTTAATAGGTACATGCAAGCTAGTGCTGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAACTGGTTGAGTTGATGGGTGGTCATCTCACCGTTTCTAGCCGAGAGAATCATGGATCTACATTTACATTTGTACTGCCATATAAAGTTTCAACCACCTGCAGTCCTTCCGACGATTCCGACGAGCTCTCAGACGAGGAATCGACAAACGACGAAATGACTGAGGGCTATTTCCAATTCCAACCCCACAGTTTCAGTTCCCTATCATCTTCCAATGGATCCACTAGAATCCCAAATGCCTTGTTACATACAACTGGATATCCTACCTCAACCAAACTCAATGGCTTTGCTGAAAATTCTGTTTCTTTTCCCTCAAACAACATCAAACCAAAAGAAACTGCTTCCATTTCGGCCAATTCCGCGGTAACCTCAAGCGAATCGCAATGTTCATCAAACCAGAACTCAAATCTTGATAACGAGAAACCAACTGATGGACTTCAGCCCGACACTAATTCTCGGCCCCAAAATGTGAGTGTGAATTCCCATCACAGATCAGAAATATCAAAACAAGAAGATACATTGGGAAAGACGAGTAATAAACTCCAGAAAACGGATCAGAGGAAGGAGAGATCCGATGCAAGTTCCCACTGCAGAAGTAGCAGTAGCGGTTCTGAAGCAACGGTGGCATCGGAGCCCAGAATTCTTCTAGTTGAGGATAATAAGACCAATATTATGGTAACTCAGTCAATGATGAAGAAGTTCGGCCATAAAATCGACGTGGTGACCAATGGAATTGAAGCTGTGCGTGCAGTTCAGCGACGTTCATATGATCTCATTCTCATGGATGTTTGTATGCCAGTTATGGATGGTCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACGGGAAGTTGGGAAGCAGCTGCAAATGCTGGGATCGACCCAACGACTCCTTGTTGGACCCCATCGTCCTCCCGTCAGAGGATGTCCATCATTGCTATGACGGCGAACGCACTGTCAGAAAGCGCAGATGAGTGTTATGAGAACGGTATGGACTCATTCGTACCAAAGCCGATCACCTTCCAAAAATTGAAGGAGTGTCTTCAACAGTATTTACCACAACGTCCCTTGTAA 2994 42.79 MVCEMETDVIEDMDIEVLPSMWPEDVGPDVRKQFNVERPGIDQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYGGDKRPISILEESCDIWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRTVDLEKLLEASLQREQMLAEKLQENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLEEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMRLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTPQGKVGINLYVLPYPPTGKGEECHKKSTANNSTVSVNGVQEGTCLPSPQNGLRGQSHADRNHLHCESGKKSEATVNGNRENNSCSPETTVWIRCDVYDTGIGIKEEALPTLFNRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSDDSDELSDEESTNDEMTEGYFQFQPHSFSSLSSSNGSTRIPNALLHTTGYPTSTKLNGFAENSVSFPSNNIKPKETASISANSAVTSSESQCSSNQNSNLDNEKPTDGLQPDTNSRPQNVSVNSHHRSEISKQEDTLGKTSNKLQKTDQRKERSDASSHCRSSSSGSEATVASEPRILLVEDNKTNIMVTQSMMKKFGHKIDVVTNGIEAVRAVQRRSYDLILMDVCMPVMDGLQATRLIRSFEETGSWEAAANAGIDPTTPCWTPSSSRQRMSIIAMTANALSESADECYENGMDSFVPKPITFQKLKECLQQYLPQRPL 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3013763 3021583 + MC11g0380 Mch11g0473 679407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0473 997 SMART REC_2 851 988 IPR001789 GO:0000160(InterPro)
Mch11g0473 997 MobiDBLite consensus disorder prediction 803 834 - -
Mch11g0473 997 Coils Coil 181 215 - -
Mch11g0473 997 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch11g0473 997 CDD HATPase_EvgS-ArcB-TorS-like 487 666 - -
Mch11g0473 997 MobiDBLite consensus disorder prediction 741 848 - -
Mch11g0473 997 SUPERFAMILY CheY-like 850 994 IPR011006 -
Mch11g0473 997 Coils Coil 92 112 - -
Mch11g0473 997 ProSiteProfiles Response regulatory domain profile. 852 992 IPR001789 GO:0000160(InterPro)
Mch11g0473 997 SMART HKATPase_4 482 669 IPR003594 -
Mch11g0473 997 CDD REC_hyHK_CKI1_RcsC-like 853 988 - -
Mch11g0473 997 Pfam Response regulator receiver domain 853 920 IPR001789 GO:0000160(InterPro)
Mch11g0473 997 FunFam Histidine kinase 5 213 348 - -
Mch11g0473 997 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch11g0473 997 Gene3D - 435 673 IPR036890 -
Mch11g0473 997 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 667 IPR003594 -
Mch11g0473 997 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 667 IPR036890 -
Mch11g0473 997 PRINTS Bacterial sensor protein C-terminal signature 653 666 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch11g0473 997 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch11g0473 997 PRINTS Bacterial sensor protein C-terminal signature 629 647 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch11g0473 997 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch11g0473 997 ProSiteProfiles Histidine kinase domain profile. 378 669 IPR005467 -
Mch11g0473 997 Gene3D - 336 434 - -
Mch11g0473 997 Gene3D - 845 992 - -
Mch11g0473 997 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch11g0473 997 Gene3D PAS domain 205 335 - -
Mch11g0473 997 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 48 995 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Mch11g0473 997 Coils Coil 342 362 - -
Mch11g0473 997 FunFam Histidine kinase 5 845 993 - -
Mch11g0473 997 FunFam Putative histidine kinase 5 359 436 - -
Mch11g0473 997 MobiDBLite consensus disorder prediction 741 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0473 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0473 Mch-Chr11:3013763 Mch4g1467 Mch-Chr4:18150559 9.66E-50 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1771 . 93 1286 Histidine Kinase Gene Family AT2G17820 63.9 0.0e+00 1432.9
Mch9g1183 . 20 1006 Histidine Kinase Gene Family AT2G01830 70.7 0.0e+00 1324.7
Mch4g1467 . 24 987 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1322.8
Mch4g0340 . 189 1180 Histidine Kinase Gene Family AT2G01830 52.7 2.2e-274 942.2
Mch7g0079 . 63 1007 Histidine Kinase Gene Family AT2G01830 52.9 1.3e-269 926.4
Mch2g0478 . 304 1258 Histidine Kinase Gene Family AT2G01830 51.8 2.5e-265 912.1
Mch11g0473 . 1 992 Histidine Kinase Gene Family AT5G10720 58.5 6.4e-294 1006.9
Mch8g1989 . 2 1121 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1824.7
Mch4g0317 . 18 1136 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1230.7
Mch5g0771 . 27 1120 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1179.5
Mch5g0771 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.3 0.0e+00 1661.4
Mch3g1027 . 15 1046 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1237.6
Mch8g1989 . 22 1055 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1098.2
Mch4g0317 . 26 1089 Histidine Kinase Gene Family AT2G18790 51.2 0.0e+00 1078.2
Mch4g0317 . 12 1135 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1370.5
Mch5g0771 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1150.2
Mch8g1989 . 10 1115 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.9
Mch5g0771 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1701.0
Mch3g1027 . 25 1108 Histidine Kinase Gene Family AT4G16250 58.1 0.0e+00 1273.8
Mch8g1989 . 9 1116 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1146.7
Mch4g0317 . 26 1135 Histidine Kinase Gene Family AT4G16250 51.2 0.0e+00 1114.8
Mch3g1027 . 37 1109 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1339.3
Mch5g0771 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1260.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42574 PF02518 HATPase_c 3.20E-27 CL0025 Mch TR