Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0475 ATGGGCTATCTGAATTCAGTATTGTCTTGCTCGAGCCAGATTCATGCTGCCGAGGAGGCACCTGTTAGCGGGGGCGGACTAAGTCAGAATGGAAAGTTCAGCTACGGGTATGCTAGCTCCCCAGGGAAGAGATCTTCAATGGAAGATTTCTACGAGACACGAATAGATGGCGTGGAAGGAGAAATAGTTGGCCTATTTGGCGTTTTTGATGGTCATGGGGGTGCACGGGCTGCTGAGTATGTTAAACACCATCTTTTTAGTAATCTGATCAGGCATCCAAAGTTCATATCAGATACCAAATCAGCAATAGCTGATGCATACAACCATACAGACACAGAATTTCTGAAGTCAGAAAATAACCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTAGTTGGCGACCGTTTACTTGTTGCAAATGTGGGTGATTCTAGAGCTGTTATTTGCCGGGGTGGCACTGCCATTGCTGTCTCCCGAGATCATAAGCCTGACCAAACTGATGAGCGACGACGAATTGAGGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCATTTGGTGATAGATTGTTAAAGCAATATGTCGTCGCTGACCCTGAAATTCAGGAGGAAAAGATTGATAGCTCGCTCGAGTTTCTTATACTTGCAAGTGATGGGCTGTGGGATGTCGTCTCTAACGAGGAAGCTGTTGCAATGACTAAACCGATCCAGGACCCAGAAGAGGCAGCGAAGAGGTTGATGCAGGAAGCGTATCAGAGAGGCAGTGCAGACAACATTACTTGTGTCGTTGTTCGTTTCTTGGAAAATCAAGGAAGTCCTTCTCGCGGAACTTCCGGGTAA 882 47.05 MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKHHLFSNLIRHPKFISDTKSAIADAYNHTDTEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLENQGSPSRGTSG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3037149 3041687 - MC11g0382 Mch11g0475 679409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0475 293 PANTHER PROTEIN PHOSPHATASE 30 279 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch11g0475 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Mch11g0475 293 CDD PP2Cc 33 280 IPR001932 -
Mch11g0475 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Mch11g0475 293 SMART PP2C_4 24 278 IPR001932 -
Mch11g0475 293 FunFam probable protein phosphatase 2C 59 26 284 - -
Mch11g0475 293 SMART PP2C_SIG_2 45 280 IPR001932 -
Mch11g0475 293 Gene3D - 26 285 IPR036457 -
Mch11g0475 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Mch11g0475 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0083 Mch-Chr10:469414 Mch11g0475 Mch-Chr11:3037149 6.24E-119 dispersed
Mch11g0475 Mch-Chr11:3037149 Mch4g1826 Mch-Chr4:21120484 8.86E-124 dispersed
Mch11g0475 Mch-Chr11:3037149 Mch11g1054 Mch-Chr11:7341252 3.27E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0475 K17506 - csv:101216117 573.933