Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0478 ATGGCGGCTCTCTCTCTCTCCTCTTTCTCACTCCTCTTCTTTTTCCTTTTCTTCCACTCGTTCGCCGGAAAGGTCGCGCCGGACGGCCACCACCTCACTGTCGAACTCGCCGCCCTTCTGCCCTCCGCCGCCTGCAGCCGCCGCTCTGCCAAAGTTACAGGTGTGAAAAAAGAAGATTCGTCTCCGTCTCTGGAGGTGGTTCACCGGCATGGGCCGTGCGCCGGAGCTTCAAAAGCGCCGAGCGAAGCGGAAATCTTTGTCCGCGATCAGGCTCGGGTGGACCTCATCCACTCCAAGTTCTCAGAGGAGTCTGGTTCGGGTTCGGTCCAGCGTATACGGCCGTCGAAGGCGACGAAGATTCCGGCGAAGTCCGGCGCCACCATCGGGTCCGGTAATTACATAGTGAGCGTCGGATTGGGGACGCCGAAGAAGGAGCTGTCGCTAATATTCGACACGGGGAGCGATCTGACGTGGACTCAGTGCGAGCCTTGCGCCAGATATTGCTACAGCCAGAAGGATCCGGTTTTCGCTCCTTCCAAATCCACCTCTTATTCCAATATCTCTTGTTCCTCCCCTTCCTGCTCTCAGCTTGAATCTGGCACCGGGAATGAGCCAGGTTGCTCCTCCGCGACGAAGTCGTGTATTTACGGAATACAATACGGCGATCAATCTTTCTCCGTCGGATATTTTGCCAAAGAAACGCTAAGTCTATCGTCATATGACGTCATCGAAAACTTCCTGTTTGGATGCGGCCAAAACAACCGCGGACTCTTCGGTAGCGCCGCCGGCCTTCTCGGCCTCGGCCAGGACAAAATCTCCATCGTTAAACAGACCGCACAAAAGTACGGCCAGATCTTCTCCTACTGTCTCCCCAAAACTGCCAGTTCCACCGGCTACCTAACATTCGGCGGCGGCGGCAACGGCGGAGCGCTCAAATACACGCCGATCACGAAAGCGCACGGCGTCGCCAATTTCTACGGCCTCGACGTCGTCGGAATTAAGGTCGGCGGAACTCAGTTGCCGATTTCGTCGTCGGTCTTCTCGACCTCCGGCGCGATCATCGATTCCGGCACGGTGATCACGCGGCTGCCACCGGCGGCGTACGACGCCTTGAAATCGGCGTTTCAGAAAGGCATGACGGCGTATCCGAAGGCGCCGGAGCTGTCGATCCTGGACACGTGTTACGATCTGAGCAAGTACACGTCCGTAGACGTCCCGAAGGTGAGCTTCCTCTTCAAAGGTGGAACGGAACTCGATCTGGACGCCATCGGAATCTTGTACGGAGCATCGCCGGAGCAGGTTTGTTTGGCGTTCGCCGGAAATCAGGATCCGAGATCCGTCGCGATTATAGGGAACGTGCAGCAGAAGAGTTTGCAAGTGGTCTACGATGTCGGTGGAGGGAGGGTGGGGTTCGGCTATAATGGTTGTTAG 1431 56.88 MAALSLSSFSLLFFFLFFHSFAGKVAPDGHHLTVELAALLPSAACSRRSAKVTGVKKEDSSPSLEVVHRHGPCAGASKAPSEAEIFVRDQARVDLIHSKFSEESGSGSVQRIRPSKATKIPAKSGATIGSGNYIVSVGLGTPKKELSLIFDTGSDLTWTQCEPCARYCYSQKDPVFAPSKSTSYSNISCSSPSCSQLESGTGNEPGCSSATKSCIYGIQYGDQSFSVGYFAKETLSLSSYDVIENFLFGCGQNNRGLFGSAAGLLGLGQDKISIVKQTAQKYGQIFSYCLPKTASSTGYLTFGGGGNGGALKYTPITKAHGVANFYGLDVVGIKVGGTQLPISSSVFSTSGAIIDSGTVITRLPPAAYDALKSAFQKGMTAYPKAPELSILDTCYDLSKYTSVDVPKVSFLFKGGTELDLDAIGILYGASPEQVCLAFAGNQDPRSVAIIGNVQQKSLQVVYDVGGGRVGFGYNGC 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3052757 3056984 - MC11g0385 Mch11g0478 679412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0478 476 PANTHER ASPARTYL PROTEASES 49 476 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mch11g0478 476 Pfam Xylanase inhibitor C-terminal 326 471 IPR032799 -
Mch11g0478 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 148 159 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Mch11g0478 476 PRINTS Pepsin (A1) aspartic protease family signature 352 363 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mch11g0478 476 PRINTS Pepsin (A1) aspartic protease family signature 448 463 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mch11g0478 476 PRINTS Pepsin (A1) aspartic protease family signature 139 159 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Mch11g0478 476 CDD cnd41_like 132 476 IPR033873 -
Mch11g0478 476 SUPERFAMILY Acid proteases 127 476 IPR021109 -
Mch11g0478 476 Gene3D Acid Proteases 108 303 IPR021109 -
Mch11g0478 476 ProSiteProfiles Peptidase family A1 domain profile. 133 472 IPR033121 -
Mch11g0478 476 Gene3D Acid Proteases 308 476 IPR021109 -
Mch11g0478 476 Pfam Xylanase inhibitor N-terminal 133 304 IPR032861 -
Mch11g0478 476 FunFam Aspartyl protease AED1 110 303 - -
Mch11g0478 476 FunFam Aspartyl protease AED1 306 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0478 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0478 Mch-Chr11:3052757 Mch9g1670 Mch-Chr9:18750680 3.49E-79 dispersed
Mch11g0478 Mch-Chr11:3052757 Mch9g0484 Mch-Chr9:3569258 2.66E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36