Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0480 ATGGCTTCCCTTTCGCTCCGCCCATGTCTTCCCATCTCCCCTCTCTCCCACGCATCTAAGCCCACGCGCCTCCCCAATTTACTTCTTCTTCCCGCTTCTTCATCTTCCTCTTCGCCGTTCTTCACACTCGCCGCCGCCAGAAAGAGACCCGCCGTGTGTGGCGCCGCGGTCACGGACGCCGAAGCTGCTGTTGCTGCTGCTCCGATCAACGATCTGACGGATGACGGAGAACGGAGGGCCGTTTTGGATCCCACGGCGGAGGAGGAGGTCGGCGATGGAGCCGCGGCGGAGTACGACTGGACGGAGGAGTGGTACCCGCTGTACCTGACGCGGAACGTGCCGGAGGATGCTCCATTAGGGCTCACCGTCTTCGACAAGCAGCTGGTGCTGTACCGGGATGGAGCCGGCGAGCTCCGATGTCACGAAGATAGGTGCCCACACAGGCTAGCAAAGCTCTCTGAAGGCCAAATAATGGATGGCAGATTGGAATGTCTTTACCATGGCTGGCAATACGAAGGGGATGGGAAATGTGTGAAGATCCCTCAGCTTCCATCAGATGCCAAGATTCCTAGATCAGCATGTCTAAAAACATATGAGGTGAGGGACTCACAGGGAGTTGTATGGGTGTGGATGTCTTTGAAGAAGCCATCAACCCTGAAAAAAATACCATGGTTCGAGAACTTCGAGCGTCCCGGGTTTCGAGATTTTTCGACTGTTCACGAGCTTCCATATGACCACTCCATACTTCTTGAGAACCTTATGGATCCTGCTCATATACCAATCTCCCATGACAGAACTGATTTTACAGCCAGAAGGGAAGATGCTCAGGCGCTAGGATTCGAAGTTACCGAGCGTACAGATCGCGGTTTTGCTGGTCGGTGGGGCTATGCTAAAGATCAGCCATTGCCAAACTTCTTAAGGTTTGAAGCACCTTGTGTTCTTCATAATAGTAGGGAAATTCCCAATGAGAAAGGTGGGAAATATTTTTTTTCAGGACTTTTCCTCTGCAGACCCACAGGCCAGGGGAAATCAATGCTTATAGTGAGATTTGGTAGCACAAGACCATCTTCTTTTCTATTAAAATTGCTGCCTTTATGGTTTGTGCACCAAAATGCCTGCAAGGTTTTCGAGCAAGATATGGGATTCCTTTCTTCCCAAAATGAGGTTCTAATGAGAGAAAAACTGCCCACCAAGGAACTCTACCTCAACCTCCGATCCTCCGACACTTGGATCGCCGAGTATCGTCGCTGGATGGACAAGGTCGGGCACGGGATGCCGTATTACTTCGGACACAGTACGATTTCGTTGCCCGAGCTGCCAGCCGTTGTCGAACACGCCCCGGTGGGACTACTTGCTGGAGCTTCAGCATCTACACCGGCCAAGGGGGGAATCGGGACGATGCACGCTCCGAATCTGGCGAATCGGTACTTTCGACATGTCGTTCATTGTAGAAGTTGCAGCAATGTAATCAAAGCTTTTCAAATTTGGAACAAGGCTCTTTCTGCCATGGCCATCGCATTGGTTGCTTTGGCAATTTTGGTGAGTGGAAGGCAATGGAAGGCCCTCATTCTTCTGTCAGCTGCATCGTGCTCTGGTGGAGCTTATGCTTGCTCAGCCATTGTTGCATTAAATACAACTAATTTTATAAGAACTCACAGAAGATTGTAA 1668 50.96 MASLSLRPCLPISPLSHASKPTRLPNLLLLPASSSSSSPFFTLAAARKRPAVCGAAVTDAEAAVAAAPINDLTDDGERRAVLDPTAEEEVGDGAAAEYDWTEEWYPLYLTRNVPEDAPLGLTVFDKQLVLYRDGAGELRCHEDRCPHRLAKLSEGQIMDGRLECLYHGWQYEGDGKCVKIPQLPSDAKIPRSACLKTYEVRDSQGVVWVWMSLKKPSTLKKIPWFENFERPGFRDFSTVHELPYDHSILLENLMDPAHIPISHDRTDFTARREDAQALGFEVTERTDRGFAGRWGYAKDQPLPNFLRFEAPCVLHNSREIPNEKGGKYFFSGLFLCRPTGQGKSMLIVRFGSTRPSSFLLKLLPLWFVHQNACKVFEQDMGFLSSQNEVLMREKLPTKELYLNLRSSDTWIAEYRRWMDKVGHGMPYYFGHSTISLPELPAVVEHAPVGLLAGASASTPAKGGIGTMHAPNLANRYFRHVVHCRSCSNVIKAFQIWNKALSAMAIALVALAILVSGRQWKALILLSAASCSGGAYACSAIVALNTTNFIRTHRRL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3071421 3073872 + MC11g0387 Mch11g0480 679414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0480 555 Pfam Pheophorbide a oxygenase 308 394 IPR013626 GO:0010277(InterPro)
Mch11g0480 555 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 104 209 IPR017941 GO:0051537(InterPro)
Mch11g0480 555 SUPERFAMILY ISP domain 97 212 IPR036922 GO:0051537(InterPro)
Mch11g0480 555 Pfam Rieske [2Fe-2S] domain 103 185 IPR017941 GO:0051537(InterPro)
Mch11g0480 555 SUPERFAMILY Bet v1-like 205 424 - -
Mch11g0480 555 Gene3D - 99 228 IPR036922 GO:0051537(InterPro)
Mch11g0480 555 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 34 507 IPR050584 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016491(PANTHER)|GO:0045036(PANTHER)
Mch11g0480 555 Gene3D - 231 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0480 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0480 Mch-Chr11:3071421 Mch3g0612 Mch-Chr3:10535048 4.38E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33