Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0493 ATGGGTATATACCTCAGCAATCCCAAAACTGAAAAATCCTCTGAAGATGGTGGGAATGGAAGGCTTAGATATGGACTATCATCCATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCATTTCCTGATCTGGATGCTTGCACTTCATTCTTTGGTGTTTATGACGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTACCTACATCAGCAAATGAAGAAAAATGAAGCTTATGCAGCTGGAGATATAGGAACTTCTGTGCAGAAAGCATTCCTCAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCTGTTTTGGGTGATAGATTAAACAAGTTCACTGGCATGATAGAAGGGTTAATCTGGTCCCCAAGAAGCAGTGATGCAAATGACCAGGCTGATGATTGGGCTTTTGAAGAGGGTCCGCACTCTGATTTTACTGGCCCGACTTCAGGATGTACAGCTTGTGTTGCAATTATTAGAAATAATCAACTTGTCGTTGCTAATGCTGGTGATTCTCGTTGTGTGATATCAAGAAAGGGTCAGGCTCATAATCTCTCCAGAGATCACAAGCCCGACCTTGAGGCGGAGAGGGAAAGAATTCTGAAGGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAACAAATTTTTACCTGCTGAAAAGCAAATTATCACTGCAAATCCTGATGTAACCACTGTCGAGCTTTCCGATGATGACGAGTTTATGGTTATAGCCTGTGATGGGATATGGGATTGTATGTCCAACCAGCAACTGGTAGATTTTATACATGAACAGCTAGAATCAGAAAGTAAACTCTCTGTGATTTGTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGGTGCAGTTCAAGAAAGGCATCCATTCGAACACCTCTGCTGATGAGCAAACTTCACCCCCCGCTGCCACCACCCCCACCGAACCAGACAGTGCTGAATCGAAGCAAGGCGATTAA 1092 44.6 MGIYLSNPKTEKSSEDGGNGRLRYGLSSMQGWRATMEDAHAAFPDLDACTSFFGVYDGHGGKVVAKFCAKYLHQQMKKNEAYAAGDIGTSVQKAFLRMDEMMRGQRGWRELAVLGDRLNKFTGMIEGLIWSPRSSDANDQADDWAFEEGPHSDFTGPTSGCTACVAIIRNNQLVVANAGDSRCVISRKGQAHNLSRDHKPDLEAERERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVELSDDDEFMVIACDGIWDCMSNQQLVDFIHEQLESESKLSVICERVLDRCLAPSTAGGEGCDNMTMILVQFKKGIHSNTSADEQTSPPAATTPTEPDSAESKQGD 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3129560 3140922 + MC11g0397 Mch11g0493 679427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0493 363 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Mch11g0493 363 CDD PP2Cc 23 329 IPR001932 -
Mch11g0493 363 MobiDBLite consensus disorder prediction 1 20 - -
Mch11g0493 363 SMART PP2C_SIG_2 28 329 IPR001932 -
Mch11g0493 363 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Mch11g0493 363 Pfam Protein phosphatase 2C 136 313 IPR001932 -
Mch11g0493 363 MobiDBLite consensus disorder prediction 335 363 - -
Mch11g0493 363 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Mch11g0493 363 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Mch11g0493 363 Gene3D - 1 330 IPR036457 -
Mch11g0493 363 SMART PP2C_4 13 327 IPR001932 -
Mch11g0493 363 PANTHER PROTEIN PHOSPHATASE 2C 21 330 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0493 Mch-Chr11:3129560 Mch9g0624 Mch-Chr9:4663637 1.91E-35 dispersed
Mch11g0493 Mch-Chr11:3129560 Mch8g3003 Mch-Chr8:32638254 3.26E-37 wgd
Mch11g0493 Mch-Chr11:3129560 Mch9g0471 Mch-Chr9:3484858 5.45E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0493 K17499 - csv:101211604 638.647