Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0501 ATGGGGACATCGTCGGGTGCAAAGGACGATATAGAGATGAATAGTGAGGCAGAATACTATTCACCTGGAACTGATATGGATACAGACGATGATGATTATTCTGAGGCAGTCAACATACGCGAAATTGGGGAAGGGTTTTTAAAGGATTTCTGTAAGAAGGCATCGATGGCATTTTTTAATGAGTATGGTCTTATCAGTCACCAAATTAACTCATACAATGACTTTATAGAAAGTGGTCTTCAGAAGGCCTTTGACTATTTTGGTGAGATTGTGGTTCAGCCAGGATATGACCCCTCTAAGAAGGGAGATGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACGCTTGATAAGCCAAAGTTCTGGGGTGGGGCAGCAAGTGGAAAAGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAACATGACTTATTCATCAAGGATGAAAATGAATATTAATGTAGAGGTGTATACTCAAAGGTTAGTCAGAAGTGACAAATTTAAAACTGGGAAAGATCAATATGTCGACAAAGATCTTTTAAGTCAAGATAACAGGGAGATATTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGAAGAGCAGAAACGTGACTGTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTATTGCTCAAGAGCAGATTTGTTTGAGAAGACTCTGGATTTCTAATATCCAAGGTTGGACTGTGGCATACAGATCAGAAGTTAAGAGGAATAGACTAATTATTAGACTAGTAGAAAATTCCAAGTCTGAAGAACTTAAAAGCAAGGAGAAAGTCCTCAATGTATATTTCTTGTCCACAGAAATTCCCGTGTGGATTTTATTCTTTGCCCTAGGTGTTTCATCGGACAAAGAAGTAGTAGATCTAATTGATTATGGCAGGGACGATCCAACTGTTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTTGATAATGATGATAAGTGGAAAGATTTTCGAAGAGGTAAAAAAGCTCTGAATTATTTGGACAATGAGATTAAAAAGACCAGTTTCCCACCTACTGAAAAAATTGAAGATTGCCTTAACCTGTATCTTTTTGCCAGCTTGAAAGGCTTAAAGCAGAAGTGTCGTTTTCTTGGTTATATGGTTAAATGTATCCTGCAAGCCTATACTGGCCGTAGAAAAAGTGATAACAGGGATGATTTTCGCAATAAGAGGTTCGAGTTGGCTGGAGAATTGCTTGAACGAGAGATTAAAGTGCATATTGCACATGCACGGAGACGCATGGAAAAGGCTTTGCAAAGAGACCTTTATGGAGATCGTGAAGTGCGCCCAATTGAACACTATTTGGATGCTTCCATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCGCATCCATTCAAGAGGATGGAAAGGATTTCGGGTGTCGTGGCAACGCTTGGTCGTGCTAATCCCCTGCAGACAATGGCTGAATTGAGGAGAACACGTCAACAGGTTGCATACACGGGGAAAGTTGGCGATGCAAGATATCCGCATCCTTCTCACTGGGGAAGGGTTTGCTTTCTCTCCACCCCGGATGGTGAAAATTGTGGGCTTATTAAAAATATGTCCATCACAGGTCTAGTAAGCTTAAACACATTGAAGCCTATAGTTCCCACATTGTTTCGGTGTGGGATGGAGAATTTGGTGGACGATACATTTACTCCTCTTAGTGGGAGCTACAAAATTTTTCTCAATGGGGAATGGGTTGGCATTTGTGCTGATTCCGTTTCATTTGTGACAAAACTGAGACGCAAGCGACGAAGGAATCAATCACTGCATCAGGTAGAAGTAAAAAGAGATGAACAACTGAAGGAAGTACGTATATTTTCGGATGCTGGAAGGATATTACGTCCTCTCTTAGTTGTAGAGAACTTAAACAAGATCGATAAGTCTAAGGGAGAAAATAACACTTTCCAATCCCTTTTGGACAAGGGAATAATTGAGCTTATTGGAACTGAAGAAGAAGAAGACTGCCGTACAGCTTGGGGTATTAAGTATCTGATGGAAAATGAAGGGACTACGAAATATTCCCATTGTGAACTCGACATGTCATTTTTATTAGGATTAAGCTGCGGACTTGTCCCATTTGCAAATCATGATCATGCTAGGAGGGTTCTGTATCAGTCCCAGAAACACTCTAATCAAGCCATTGGATTTTCAACAACTAATTCCAATTTTCGCGTTGATACTCTATCTCATCAGTTACACTATCCGCAAAGGCCACTTTTTCGTACAATGAATGCTGATTGTCTTGGAACACCTGGATACCTGTCATCTCACAGTGGGATATCCCCAAGACCCGAGTTCTACAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCACCTGGGTTACAACCAAGAAGATTCTTTAGTGATGAACCGGGCCTCTCTGGAGCGTGGTATGTTCCGATCTGAGCACATTCGCAGTTACAAGGCTGATGTAGATAATAAAGAATCCTCCGAAAAGAGGAGGAAATCTGATGACGCAATAAATTTTGGAAAGACTCAGAGTAAAATTGGAAGGGTGGACAGCTTAGATGATGACGGCTTCCCTTACATTGGTGCAAACTTGCAGAGTGGAGACATTGTCATTGGCAGGTGTGCTGAATCTGGGGCAGATCACAGTATCAAACTGAAGCACACTGAGAAGGGCATGGTTCAGAAAGTCGTGCTCTCTTCTAACGATGATGGGAAGAATTATGCTGTTGTATGCCTGAGACAGGTTCGTTCCCCATGTCTTGGAGACAAGTTCTCTAGCATGCATGGACAAAAGGGAGTTCTTGGCTTTCTGGAGTCTCAAGAGAATTTCCCATTCACCATCCAGGGGATAGTTCCAGATATTGTTATAAACCCGCATGCTTTTCCTTCGCGACAAACTCCTGGTCAACTATTGGAAGCTGCTCTCGGGAAAGGCATTGCTGCTGGCGGTTCGCTGAAATATGCCACTCCTTTCTCCACTCCTTCCGTTGATGCCATTACAGACCAGCTTCACAGGGCAGGGTTTTCAAGATGGGGTAGCGAGAGGGTGTACAATGGCCGAACTGGTGAAATGATGCGGTCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTAAAATTCCGCAACACCGGCCCCGTCCACCCTCTCACCCGACAACCTGTCGCCGACAGGAAGCGTTTTGGCGGGATCAAGTTTGGCGAGATGGAGCGCGACTGCCTTATAGCTCACGGGGCCTCAGCCAACTTGCACGAACGCTTGTTTACCCTCAGCGACTCTTCCCAGATGCACGTCTGCCAGAAATGCAAGAATGTCGCAAGTGTGATCCAACGATCAGTGGCCGGTGGTCGCAAGATAAGGGGCCCGTATTGTCGGGTTTGCGAGTCGGTCGACGACATTGTGAGGGTGAACGTACCGTATGGAGCCAAGTTGCTGTGCCAGGAGCTGTTCAGCATGGGCATCAATCTCAAGTTTGAAACACAACTGTGTTGA 3585 43.63 MGTSSGAKDDIEMNSEAEYYSPGTDMDTDDDDYSEAVNIREIGEGFLKDFCKKASMAFFNEYGLISHQINSYNDFIESGLQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKMNINVEVYTQRLVRSDKFKTGKDQYVDKDLLSQDNREIFIGRLPVMVNSDLCWMKEEQKRDCEFDHGGYFLIKGAEKIFIAQEQICLRRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKSEELKSKEKVLNVYFLSTEIPVWILFFALGVSSDKEVVDLIDYGRDDPTVLNILFASVREVDNDDKWKDFRRGKKALNYLDNEIKKTSFPPTEKIEDCLNLYLFASLKGLKQKCRFLGYMVKCILQAYTGRRKSDNRDDFRNKRFELAGELLEREIKVHIAHARRRMEKALQRDLYGDREVRPIEHYLDASIITNGLSRAFSTGAWAHPFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNMSITGLVSLNTLKPIVPTLFRCGMENLVDDTFTPLSGSYKIFLNGEWVGICADSVSFVTKLRRKRRRNQSLHQVEVKRDEQLKEVRIFSDAGRILRPLLVVENLNKIDKSKGENNTFQSLLDKGIIELIGTEEEEDCRTAWGIKYLMENEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRVLYQSQKHSNQAIGFSTTNSNFRVDTLSHQLHYPQRPLFRTMNADCLGTPGYLSSHSGISPRPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKESSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVVCLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKIRGPYCRVCESVDDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3172797 3180231 - MC11g0405 Mch11g0501 679435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0501 1194 Gene3D - 721 1077 IPR037033 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 MobiDBLite consensus disorder prediction 1 31 - -
Mch11g0501 1194 FunFam DNA-directed RNA polymerase subunit beta 56 239 - -
Mch11g0501 1194 Pfam RNA polymerase Rpb2, domain 5 667 710 IPR007647 GO:0006351(InterPro)
Mch11g0501 1194 ProSitePatterns RNA polymerases beta chain signature. 944 956 IPR007121 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 58 1190 IPR015712 GO:0001055(PANTHER)|GO:0003899(InterPro)|GO:0003899(PANTHER)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro)
Mch11g0501 1194 Pfam RNA polymerase Rpb2, domain 4 591 652 IPR007646 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 Pfam RNA polymerase Rpb2, domain 6 721 1091 IPR007120 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 FunFam DNA-directed RNA polymerase subunit beta 406 594 - -
Mch11g0501 1194 Pfam RNA polymerase beta subunit 63 454 IPR007644 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 Pfam RNA polymerase Rpb2, domain 7 1093 1191 IPR007641 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 Pfam RNA polymerase Rpb2, domain 2 282 416 IPR007642 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 Gene3D - 751 940 IPR014724 GO:0003899(InterPro)
Mch11g0501 1194 CDD RNA_pol_B_RPB2 64 1190 IPR015712 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro)
Mch11g0501 1194 Gene3D - 57 237 - -
Mch11g0501 1194 Gene3D - 406 637 - -
Mch11g0501 1194 FunFam DNA-directed RNA polymerase subunit beta 1078 1192 - -
Mch11g0501 1194 FunFam DNA-directed RNA polymerase subunit beta 822 940 - -
Mch11g0501 1194 Pfam RNA polymerase Rpb2, domain 3 495 554 IPR007645 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 Gene3D RNA polymerase Rpb2, domain 2 245 405 IPR037034 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Mch11g0501 1194 Gene3D RNA polymerase alpha subunit dimerisation domain 1078 1192 - -
Mch11g0501 1194 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 50 1191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0501 K16252 - - csv:101212812 2223.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0501 Mch-Chr11:3172797 Mch1g1867 Mch-Chr1:18725766 2.18E-214 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g576 Blo01g01419 . Bda01g00661 . . Bpe02g00534 . Bma01g02175 . . Cma01g01667 . Car09g00358 . . . . . . . . . . . Cla05g01679 Cam05g1794 Cec05g1802 Cco05g1858 Clacu05g1781 Cmu05g1666 Cre05g1796 . . Cone17ag0982 . Lsi04g01338 . . . . . . . . . . . Sed13g1963 Cmo01g01716 Cmo09g00414 Cma09g00409 . Car01g01281 . . Cpe02g00323 Bhi09g03010 Tan01g3560 Cmetu07g2167 . Hepe01g1964 Mch11g0501 . . . . . . . . . . . Cme07g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010517 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 32