Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0503 ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCTCAACAGGCCGGAACCATCCGCAAGAACGGCCACATCGTCATCAAGAACCGTCCCTGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCATGGACATGCAAAGTGTCACTTTGTGGGCATTGACATCTTCACTGGCAAGAAGCTCGAGGATATTGTTCCATCATCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGCTGATTGACATTTCTGAAGATGGATTTGTGAGTCTGTTAACTGACAATGGTAACACTAAGGATGATTTGAGGCTTCCCACTGATGACAACCTGCTCACTCAGATTAAAGATGGATTTGCTGAAGGGAAGGACCTTGTTGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGACATCGGCCCGAAGAATTAG 483 48.45 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3184914 3187318 - MC11g0407 Mch11g0503 679437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0503 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch11g0503 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch11g0503 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch11g0503 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch11g0503 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Mch11g0503 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Mch11g0503 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Mch11g0503 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Mch11g0503 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Mch11g0503 160 Gene3D - 1 85 IPR014722 -
Mch11g0503 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Mch11g0503 160 MobiDBLite consensus disorder prediction 1 28 - -
Mch11g0503 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Mch11g0503 160 Gene3D - 86 159 IPR012340 -
Mch11g0503 160 CDD S1_eIF5A 86 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch9g2093 Mch-Chr9:21923517 Mch11g0503 Mch-Chr11:3184914 8.03E-107 transposed
Mch11g0503 Mch-Chr11:3184914 Mch6g0624 Mch-Chr6:4221727 6.38E-111 wgd
Mch11g0503 Mch-Chr11:3184914 Mch8g0500 Mch-Chr8:3544230 1.45E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0503 K03263 - mdm:103423800 319.701