Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0505 ATGGCCTTATTTCGCAAGTTCTTTTATCGGAAGCCGCCTGACGGGCTTCTAGAGATATCTGAAAGGGTTTATGGTATGTCCTACTGTGCCTTGAACTCCCCCACCCCTTTCCACCCCAAAATACTCTGTGCATTGAACTTGGGTAAACCAATGAATGTGTGTGCAGTTTTTGACTGCTGCTTTACCACGGAGGTTTTGGAAGAGGTAGATTACAAAGTCTATATTGGAGGCATAGTGGGTCAACTTCGTGAGAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCAGAGAGGGGGAGAGCCAAAGCATGATTACTAATATATTATCTGACTATGATATGACTGTCATGGACTATCCTCGACACTATGAAGGCTGCCCTCTACTTACTATGGAGATGATCCACCACTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAACAAAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCAGTCTTGGCTTTCATGTTGGCTGCTCTTTTGATTTACAGGAAGCAGTATGCTGGGGAGCAAAAAACTTTAGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCCCCTCTTAATCCATTGCCTTCGCAATTGAGGTATCTCCAATATGTATCGAGAAGAAATGTGGCATCCGAATGGCCTCCACTTGATAGGGCGCTTACATTAGACTGCGTAATTATTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCCTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAATATAAGCAGGTAGATTGCGAACTAGTTAAAATTGATATCCATTGCCATATCCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTCATGTTCAATACAGCTTTTATAAGATCAAATATTTTGATGCTCAACCGTGATGACATTGATATCTTGTGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCCACGGCATCACTTATTTCAATTGAATTACCAAATATTGAGGAGAAAGATGGTCTTCCAATTGAAGCGTTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAAGCAGATGCAGCTCTTAATATGCTTCAAAAAATAACATCATCGAATGTGCTCCAAGAGAAATTGCTTAGTTCTGCCTCTTCTTTAGACAGAAACCAGTTGCTTGACTTATCTTTTGAAAAACTAATCTCGGAAGCAGAGACATCTGAAGACAACATTAGAAGTCCCCGATTGAGAGTGAAAACAAAGCAATCTCGGCTTTCTTCTGAGCTATCTCGTGCTGCAAGTCCAATAAGATCAGAGGATGAATCCCCAGAACTGCAGGTTGCTCTCCAACTACCAGTCCAGTCTAAAATCATTACCCAGCGAATACCTGAACCTTCCTTGTCCACACCAGTCTCCTTCCGGAGTTCTGTGCAATGTTCACCTCGCCCAATATTAAGAAATAACAGTGCCCCCTCAGCTCTTGGCATTACAGCTTTATTACATGATCATTCAAATTCTAGTAGTAAAGAAGTCATACATCCATTGACAGTATCTTCACCTTCGTTTGCTCTGTCACCTTCATCTGCTCCGTCACCTTCATCTGCTCTAGATTCCCCTAAAGATATTCAACCAAGTAAGCTTCCTATTTTACCTCCAAGTTACACCTTAGAAGATTCTCCTACCACCACCTCAACTTCAAACATTGGTGATCGGCTGTTGCTTCACCAACTTTCTTTGAAAACTATTAAATCTTCAATTTCTCAACAGTCTCAAACCACATCACCAGGGAGAAGTCAATTGTCACCATATTCACATCAAGCAACGCCTACCTCTCGTCTTGGGGGGTCTCCACCCTCTTTCAATGAGAGCTTACCTTCAATATCCTCTTCTTCTCCTTTATTAGCATCATCTCCAACTTCCTCTATTAAGGATTCATTTTCGGTTCCCACTCCTCCCCCTCCTTCTCCTCCCCCCTCTCTGCTTGATTCACCTTCGTATTTGGTAACATCTCCATCTTCTAGAAAGACTAATGGTTTAGTTTCCTCATCTCCACCTCCACCTTCTCCAACCATTAGTTTTTCTCCAAATGACAGTCTAGTTTCTTTTCAGTCACCTAAAAAGAACTTGACAATTGTCCCTCCCCCTCCTCCAACTTCTAACCCTAATTTGGGTACTAGTGTCATCTCGCCAACATCGGTGCCCCCACCCCCACCCCCACCTCTTTCATGGAATGACTCTACAATCACATCCATGCATGATTCCCCGCCTACACCTCCAGCCCCACCTTCTTTAGGTTCAACATTTACTAGTGGTCCCAGTATCACGTCTTTAACGCTGCCACCACCACCACCACCACCACCGCCTCTTCCTAGTCTTGCATCACAAGATTCCGCAACGATAGTTAGCAACTTGACAACTGGCCCCCCGCCTCCCCCACCTCCACCATCTCTTAGTTCTACCGTAGTGCCTAGTATTGTATCTTCAGTCCCTCCACCTCCCCCTCCTCCTAGTCTTGCAGCAAATGGTTCTGCAACAACAGTTGACTTGACACATGTCTCTGGCCCCCCTCCTCCTCCTCCACCACCTTTTGTGAATTCTGGATCCCCATTAAGTCTTGGTGTTGTATCGTCAGCTCCACCTGCACCACCTCCTCCAGGTTCTCCTATGAAGGATTCACCAACACATGCTCCACCTGCACCCCCTCCTCCTTTTAGTGGTAATAAACTTTCGAATGTCAATGGTACTTCCTCACAGTCTCACATTGGCATTAATAACGGCAACATACCTTCTATTCCTGGACCACCTTCTAGTGCTCTATTCAATTCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCTACCTAAAAGATCCAATTTGAAGCCTTATCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCCTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCTGGTGGAAATTCAAATCGCCGAGCCTCAGGGCCAAAATCAGATAAAGTTCATTTGATTGAACTTCGGCGGGCATATAATTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCCGATATGATGAGTTCAGTCCTAGCCTTGGATGATTCAGCATTAGATGTGGATACGGTTGAGAACCTAATCAAGTTCTGTCCAACAAAAGAAGAAATGGAACAACTTAAGGCATACAGTGGGGATAAGGACAACTTGGGAAAATGCGAACAATTCTTCTTAGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGTTTGCAGGTCTCTGACCTTAGATATAGTCTGAATACTATCAATTCGGCATCTGAAGAGGCAAGTTCTGCTATTGGATTTCGGCTTGATAGTCTTCTCAAACTCACTGATACGCGAGCCAGAAACAACAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTCTGGATTTTCCGAAGGACCTTGTGAGTTTGGAAGGTTCTACAAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATTAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCGAATTCAGAAAATGATGGGATTGTTTCAGAAAATTTTTGCCGGACTTTAAAAGGCTTCCTTTCTCATGCCGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGGAATGCTGATGCATTGGCGCTTTACTTCGGGGAGGACCCAGCACGTTGCCCTTTTGAGCAAGTTGTATCGACGCTGTTCAATTTTGTGCGTATGTTCGTGCGAGCGCATGAAGAGAACTGCAAGCAGCTTGATTACGAAAAGAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGGAGAAGAAGGAGAAGTTGAAGGTCAGTACCCCAAAAAAGGAGTCAGGATTCTTGATGAAGACCCGAACCTAG 4212 43.99 MALFRKFFYRKPPDGLLEISERVYGMSYCALNSPTPFHPKILCALNLGKPMNVCAVFDCCFTTEVLEEVDYKVYIGGIVGQLRESLTDASFMVFNFREGESQSMITNILSDYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCVIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDATASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNMLQKITSSNVLQEKLLSSASSLDRNQLLDLSFEKLISEAETSEDNIRSPRLRVKTKQSRLSSELSRAASPIRSEDESPELQVALQLPVQSKIITQRIPEPSLSTPVSFRSSVQCSPRPILRNNSAPSALGITALLHDHSNSSSKEVIHPLTVSSPSFALSPSSAPSPSSALDSPKDIQPSKLPILPPSYTLEDSPTTTSTSNIGDRLLLHQLSLKTIKSSISQQSQTTSPGRSQLSPYSHQATPTSRLGGSPPSFNESLPSISSSSPLLASSPTSSIKDSFSVPTPPPPSPPPSLLDSPSYLVTSPSSRKTNGLVSSSPPPPSPTISFSPNDSLVSFQSPKKNLTIVPPPPPTSNPNLGTSVISPTSVPPPPPPPLSWNDSTITSMHDSPPTPPAPPSLGSTFTSGPSITSLTLPPPPPPPPPLPSLASQDSATIVSNLTTGPPPPPPPPSLSSTVVPSIVSSVPPPPPPPSLAANGSATTVDLTHVSGPPPPPPPPFVNSGSPLSLGVVSSAPPAPPPPGSPMKDSPTHAPPAPPPPFSGNKLSNVNGTSSQSHIGINNGNIPSIPGPPSSALFNSKGRGLGRLNSKNQSLPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMSSVLALDDSALDVDTVENLIKFCPTKEEMEQLKAYSGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRLQVSDLRYSLNTINSASEEASSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEGSTKIQLKYLAEEMQAISKGLEKVVQELANSENDGIVSENFCRTLKGFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHEENCKQLDYEKKKAQKEAAEKEKEKKEKLKVSTPKKESGFLMKTRT 1403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3197963 3209263 + MC11g0409 Mch11g0505 679439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0505 1403 MobiDBLite consensus disorder prediction 1058 1080 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 827 843 - -
Mch11g0505 1403 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 218 IPR029021 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 573 591 - -
Mch11g0505 1403 Pfam C2 domain of PTEN tumour-suppressor protein 230 368 IPR014020 -
Mch11g0505 1403 PANTHER FORMIN-J 1 1379 IPR051144 -
Mch11g0505 1403 Gene3D Formin, FH2 domain 1000 1202 IPR042201 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 957 988 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 698 712 - -
Mch11g0505 1403 SMART it6_source 510 1402 IPR015425 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 998 1012 - -
Mch11g0505 1403 SUPERFAMILY Formin homology 2 domain (FH2 domain) 931 1373 - -
Mch11g0505 1403 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 232 369 IPR035892 -
Mch11g0505 1403 Pfam Formin Homology 2 Domain 1202 1353 IPR015425 -
Mch11g0505 1403 Pfam Formin Homology 2 Domain 1006 1201 IPR015425 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 517 536 - -
Mch11g0505 1403 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1004 1379 IPR015425 -
Mch11g0505 1403 SMART PTEN_C2_2 228 368 IPR014020 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 473 494 - -
Mch11g0505 1403 Gene3D - 227 372 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 856 870 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 636 1012 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 744 759 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 636 697 - -
Mch11g0505 1403 Gene3D Formin, FH2 domain 1203 1388 IPR042201 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 1366 1403 - -
Mch11g0505 1403 Gene3D Protein tyrosine phosphatase superfamily 16 222 IPR029021 -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 713 732 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 1058 1076 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 927 956 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 903 917 - -
Mch11g0505 1403 Coils Coil 1354 1389 - -
Mch11g0505 1403 MobiDBLite consensus disorder prediction 573 619 - -
Mch11g0505 1403 ProSiteProfiles C2 tensin-type domain profile. 230 369 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0505 K28090 - - csv:101214019 1808.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0505 Mch-Chr11:3197963 Mch6g0257 Mch-Chr6:1676940 6.03E-287 dispersed
Mch11g0505 Mch-Chr11:3197963 Mch6g0629 Mch-Chr6:4253783 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g2239 . 179 1035 FH2 protein (formin) Gene Family AT3G25500 52.1 5.6e-193 671.8
Mch2g1335 . 464 886 FH2 protein (formin) Gene Family AT3G25500 62.9 1.7e-141 500.7
Mch9g1150 . 450 859 FH2 protein (formin) Gene Family AT3G25500 65.1 1.1e-135 481.5
Mch6g2051 . 496 893 FH2 protein (formin) Gene Family AT3G25500 52.7 1.7e-104 377.9
Mch6g2239 . 598 1052 FH2 protein (formin) Gene Family AT2G43800 60.1 1.5e-143 507.3
Mch2g1335 . 464 902 FH2 protein (formin) Gene Family AT2G43800 55.4 1.1e-125 448.0
Mch2g0617 . 514 658 FH2 protein (formin) Gene Family AT4G15200 68.2 1.5e-49 194.1
Mch11g1148 . 462 605 FH2 protein (formin) Gene Family AT4G15200 62.5 9.5e-44 174.9
Mch8g2030 . 23 251 FH2 protein (formin) Gene Family AT1G24150 59.8 6.7e-70 261.9
Mch2g0617 . 512 979 FH2 protein (formin) Gene Family AT5G54650 61.8 1.8e-155 547.0
Mch6g2239 . 610 1010 FH2 protein (formin) Gene Family AT5G54650 51.5 1.9e-104 377.5
Mch2g1335 . 92 905 FH2 protein (formin) Gene Family AT5G67470 58.7 2.1e-220 762.7
Mch6g2239 . 590 1052 FH2 protein (formin) Gene Family AT5G67470 58.6 1.5e-133 474.2
Mch9g1150 . 463 859 FH2 protein (formin) Gene Family AT5G67470 59.7 1.2e-111 401.4
Mch6g2051 . 496 895 FH2 protein (formin) Gene Family AT5G67470 51.0 4.1e-104 376.3
Mch9g2201 . 358 842 FH2 protein (formin) Gene Family AT1G59910 54.0 2.8e-132 469.9
Mch8g2030 . 35 466 FH2 protein (formin) Gene Family AT1G70140 51.1 1.6e-120 430.6
Mch6g2239 . 630 1011 FH2 protein (formin) Gene Family AT5G48360 53.4 2.9e-101 366.7
Mch2g1335 . 468 862 FH2 protein (formin) Gene Family AT3G05470 51.9 3.3e-106 383.3
Mch6g2234 . 1 1278 FH2 protein (formin) Gene Family AT1G31810 65.5 0.0e+00 1188.3
Mch6g0258 . 1 314 FH2 protein (formin) Gene Family AT1G31810 50.5 1.4e-94 345.1
Mch6g0257 . 1063 1384 FH2 protein (formin) Gene Family AT5G07650 75.5 1.0e-130 464.5
Mch3g1721 . 955 1236 FH2 protein (formin) Gene Family AT5G07650 72.3 4.0e-111 399.4
Mch6g0629 . 919 1245 FH2 protein (formin) Gene Family AT5G07650 60.7 1.4e-108 391.0
Mch6g2234 . 924 1275 FH2 protein (formin) Gene Family AT5G07650 54.3 4.2e-100 362.8
Mch11g0505 . 1086 1375 FH2 protein (formin) Gene Family AT5G07650 59.2 4.5e-94 342.8
Mch6g0257 . 990 1374 FH2 protein (formin) Gene Family AT5G07770 69.2 6.8e-140 494.6
Mch3g1721 . 876 1236 FH2 protein (formin) Gene Family AT5G07770 64.1 6.6e-119 424.9
Mch6g0629 . 850 1237 FH2 protein (formin) Gene Family AT5G07770 55.8 1.7e-114 410.2
Mch6g2234 . 860 1269 FH2 protein (formin) Gene Family AT5G07770 51.8 2.1e-109 393.3
Mch11g0505 . 1010 1374 FH2 protein (formin) Gene Family AT5G07770 54.1 1.5e-102 370.5
Mch11g0505 . 984 1375 FH2 protein (formin) Gene Family AT3G32400 67.5 5.7e-148 521.2
Mch6g0629 . 834 1246 FH2 protein (formin) Gene Family AT3G32400 65.1 1.4e-146 516.5
Mch6g0257 . 990 1384 FH2 protein (formin) Gene Family AT3G32400 65.2 8.9e-141 497.3
Mch6g2234 . 860 1274 FH2 protein (formin) Gene Family AT3G32400 60.9 8.0e-134 474.2
Mch3g1721 . 850 1236 FH2 protein (formin) Gene Family AT3G32400 59.8 7.1e-122 434.5
Mch6g0629 . 1 1246 FH2 protein (formin) Gene Family AT2G25050 51.4 1.7e-291 999.2
Mch6g0258 . 1 312 FH2 protein (formin) Gene Family AT2G25050 56.1 1.4e-99 361.7
Mch6g0257 . 991 1384 FH2 protein (formin) Gene Family AT5G07780 63.5 1.9e-124 443.0
Mch3g1721 . 882 1236 FH2 protein (formin) Gene Family AT5G07780 58.5 5.3e-103 371.7
Mch6g0629 . 857 1245 FH2 protein (formin) Gene Family AT5G07780 53.2 4.9e-101 365.2
Mch6g0257 . 1 1393 FH2 protein (formin) Gene Family AT5G07740 57.4 0.0e+00 1137.1
Mch6g0258 . 1 348 FH2 protein (formin) Gene Family AT5G07740 68.3 1.2e-133 475.3
Mch6g0257 . 1062 1391 FH2 protein (formin) Gene Family AT5G07760 74.1 3.4e-127 453.0
Mch3g1721 . 954 1236 FH2 protein (formin) Gene Family AT5G07760 71.7 2.0e-108 390.6
Mch6g0629 . 925 1245 FH2 protein (formin) Gene Family AT5G07760 63.2 2.0e-108 390.6
Mch6g2234 . 934 1275 FH2 protein (formin) Gene Family AT5G07760 55.7 3.9e-99 359.8
Mch11g0505 . 1085 1375 FH2 protein (formin) Gene Family AT5G07760 58.5 2.1e-92 337.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42