Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0508 ATGGACGAAGAACAAATAGCGAATTTTGTGTCAGCGTACTTGAAGAAGAAGGGTTTCAAGGAGACAGAACAAGCTTTCCTCGAGGAGCTGCGTCACAACAAGACCAATTCCTCCTCTTCATCCTCTTCCATTGACCTCGACTTCGCCAATCACTTACTCTCCTTCACAGAAGCAGAGAATATTCCAGCCAAATACCTTGAAGGATATAGCAAGCTTAGGTCCTGGGCTTACAACTCACTAGATTTATACAAGCATGAGTTGCTTCGTGTGCTATATCCAGTGTTTATCCATTGTTTCATGGATCTTGTGGCTAAAGGACACATTCAAGAAGCTCGAACCTTTTTCAATAGATTCCGGGAAGATCATGAAATGATGCATCTGCGAGATCTACAAAAGTTGGAAGGCGTACTTTCTCCCTCTCATTTGGAGGAGATGGAATTCGCTCATTCTCTTAGGCAGAGCAAAGTCACCATAAAAATTTGCCAGTACTCCTATGAGATGCTACTTCAATATCTTCATAAGACCCAAACCACAGTGATACTTGGGATTATCAATGAACGCATCAATTTCCAAGTTTTCCCTGGTCAGCCTAGCTCAATATCGGATGATGCTGAAATTGTGACACTCACTGGAGGCACCCAGGACACTGCCAATCAGATAAATCAAAAAGAAGTCCAATGGGGGTTACTTGAAGATTCTTTGGAAGAACGCTTGGAGAAAGCTGCTGGTTTGCTTTCAGATTCTGAAAAGGCTGAGGGGGAAACCAAGGATGGCGATATAGATGAGAATAAGAAAAGAACAACCGAGGGAGGAAAGCAAGGCGCTTCAGTTAAAAAGGTCAAGAAGGACAAGACTTCCAGTGCAACTGGGAAAACTCCAAGGGCTGAAGCTAATCCTGCATCTATGACACCACGAGTGAAGCCAGAGCTTGCTTTACCCACAATTTCAACAGAGGTGGAACAATCTATTCTAGAAGATTTGAGAAACCGTGTGCAGTTGAGTTCTGTTGCTCTGCCATCAGTCAGCTTTTATACCTTCATTAATACACACAATAGTTTAAACTGTTCATCAATATCGCATGATGGAGCTTTAGTTGCTGGTGGATTTTCAGACTCTTCTTTGAAGGTAGCTGTTTTGCAGGATGAAAATGACATGTCTACTAGTGATCAAATGACAGGCAATACAAGTGGGAAGAGATCTTATACATTATTTCAAGGTCATTCTGGGCCTGTTCACTCTGCCACTTTCAGTCCTGCTGGGGATTTTGTTCTTTCCTCCTCTGCAGACACGACTATTCGATTATGGAGCACAAAACTAAATGCCAATCTTGTTTGCTACAAAGGTCACAATTACCCTGTATGGGATGTTCAGTTTAGTCCGGTTGGACATTATTTTGCTAGTTGCTCACATGATAGAACTGCGAGGATCTGGTCCATGGACAGAATTCAACCTTTAAGGATCATGGCAGGGCATCTATCTGATGTGGATTGCGTTCAATGGCATGCCAACTGCAACTACATCGCAACAGGCTCAAGTGACAAAACAGTTAGATTGTGGGATGTCCAGAGTGGGGAATGTGTCCGAATTTTCATTGGTCACAGGAGTATGATTCTGTCGTTGGCAATGTCACCTGATGGTCGGTTCATGGCATCTGGTGATGAAGATGGTACGATTATGATGTGGGACCTGTCCACTGGGCGCTGTGTTACACCATTGATTGGACACACATCATGCGTTTGGACCCTTGCTTTCAGTTGCGAGGGCTCCCTCCTTGCCTCGGGCTCTGCGGATTGCACGGTAAAATTATGGGACGTAACTTCAAGCACAAAGGCACCAAGAACGGATGAAAACAAAAGTGGTACTGCCAATAGACTTAGATCCCTGAAAACTCTACCGACCAAGTCGACTCCGGTCTACAGTTTACGGTTCTCTCGGAGGAATCTTTTATTTGCAGCAGGGGCTCTCTCCAAAAGCGCATCAACTGCTTGA 1989 44.19 MDEEQIANFVSAYLKKKGFKETEQAFLEELRHNKTNSSSSSSSIDLDFANHLLSFTEAENIPAKYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFREDHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVTIKICQYSYEMLLQYLHKTQTTVILGIINERINFQVFPGQPSSISDDAEIVTLTGGTQDTANQINQKEVQWGLLEDSLEERLEKAAGLLSDSEKAEGETKDGDIDENKKRTTEGGKQGASVKKVKKDKTSSATGKTPRAEANPASMTPRVKPELALPTISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNSLNCSSISHDGALVAGGFSDSSLKVAVLQDENDMSTSDQMTGNTSGKRSYTLFQGHSGPVHSATFSPAGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEGSLLASGSADCTVKLWDVTSSTKAPRTDENKSGTANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSASTA 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3232408 3241655 + MC11g0412 Mch11g0508 679442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 525 - -
Mch11g0508 662 SUPERFAMILY Taf5 N-terminal domain-like 50 193 IPR037264 -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 572 607 - -
Mch11g0508 662 Gene3D - 213 484 IPR015943 GO:0005515(InterPro)
Mch11g0508 662 CDD TAF5_NTD2 62 194 IPR007582 -
Mch11g0508 662 ProSitePatterns Trp-Asp (WD) repeats signature. 507 521 IPR019775 -
Mch11g0508 662 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 188 IPR007582 -
Mch11g0508 662 Gene3D TFIID subunit TAF5, NTD2 domain 45 193 IPR037264 -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 572 613 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 571 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 Gene3D - 565 659 IPR015943 GO:0005515(InterPro)
Mch11g0508 662 FunFam Transcription initiation factor TFIID subunit 5 482 652 - -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 436 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 MobiDBLite consensus disorder prediction 242 289 - -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 487 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 Gene3D - 485 564 IPR015943 GO:0005515(InterPro)
Mch11g0508 662 MobiDBLite consensus disorder prediction 242 303 - -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 655 - GO:0005669(PANTHER)|GO:0006367(PANTHER)|GO:0016251(PANTHER)
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 567 - -
Mch11g0508 662 Pfam WD domain, G-beta repeat 524 562 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 Pfam WD domain, G-beta repeat 401 436 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 Pfam WD domain, G-beta repeat 445 478 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 Pfam WD domain, G-beta repeat 566 604 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 Pfam WD domain, G-beta repeat 483 520 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 CDD WD40 404 654 - -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 446 480 - -
Mch11g0508 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 404 436 - -
Mch11g0508 662 ProSitePatterns Trp-Asp (WD) repeats signature. 549 563 IPR019775 -
Mch11g0508 662 SUPERFAMILY WD40 repeat-like 340 656 IPR036322 GO:0005515(InterPro)
Mch11g0508 662 SMART WD40_4 439 478 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 SMART WD40_4 523 562 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 SMART WD40_4 565 604 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 SMART WD40_4 396 436 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 SMART WD40_4 339 378 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 SMART WD40_4 481 520 IPR001680 GO:0005515(InterPro)
Mch11g0508 662 ProSitePatterns Trp-Asp (WD) repeats signature. 591 605 IPR019775 -
Mch11g0508 662 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515(InterPro)
Mch11g0508 662 PRINTS G protein beta WD-40 repeat signature 591 605 IPR020472 -
Mch11g0508 662 PRINTS G protein beta WD-40 repeat signature 507 521 IPR020472 -
Mch11g0508 662 PRINTS G protein beta WD-40 repeat signature 423 437 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0508 K03130 - - csv:101214018 1224.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g509 . . Bda01g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed02g0871 . . . . . . . . Bhi09g03000 Tan01g3572 Cmetu07g0650 . Hepe01g1970 Mch11g0508 . . . . . . . . . . . Cme07g00115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010521 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32