Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0515 ATGACGGTTGAGCCGCGAGTCGACGACCCAACTGATCAATTTCCGTCTGGAATGCGTGTGCTCGCCGTTGACGACGATCCCACTTGCCTTTTGATTTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCGCTGAAGTTGTTGAGAGAAAACAAGAACAAGTTCGACGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTACCTGTTATTATGCTGTCTGCAAATGGTGATCCCAAGCTTGTGATGAAAGGAATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCGAAGGACCGAATGAATTCTGACAATCTGGACAAGCCTGATTCTGAGACCGGGGAAGAAGCAGCTGATTCAAATGGGAAATTTAATAAAAAGAGGAAGGATCAGAACTACAATGAAGATGAGGACCAGGACTATAATGGGCAAGAGAATGATGACTCGTCGACCCAGAAGAAACCTCGCGTTGTTTGGTCTGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTAGATAAGCTCACAAGAGAAAATGTAGCCAGCCATCTCCAGAAATACAGGCTTTATCTCAAAAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGTGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCCTTGAGTGGACCTCCACAGTTTCCCAACACTGCTTTCAGATCTATCCCGACTACTGGGATGCTTGGTCGATTGAATACTCCTGCTTGTATGGGTATGCACAGCCTTCCTTCTCCGGGTACAGTTCAACTGGGTAGTTTGAACAATCCAAGCAATGATCAGCCTGCATTTCAGCCAATCATGCTTTCTGGAAACCGCAGCGGGAATATTTTCCGAGGAATGCCAGAGCCCTCAGAACTTGATCAACTACAACATGTTAAGCATGGGACCCATGTGGACGACCTCTCTCCTGATTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTACCAAATGCAACTATGACTGCTGGTAGCTTGAGCAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTCCACAGTGGTCGAAAATTTGGACCTCAATCTTCCATTTCAGTAGTATCCTCCAACTCAGAAAGTTCACGTCCTTCTCTAGATAATGCTAGATGCACCGGTGACAATTGGTCGAAAGCTGTTCATTCATCCAGGATCCACTTGAATACCATTCCATCCAACAACCTTTCTAATATCTCTACTTCCTACCATAGTCACTTGAGAGACAATACTACCGGTGCATTGCATATTGGAAATTGTCTTTCTGACATTTCTTCCATCACTTCAATATCTACCCAGTCCCGTGATTCGCAAACAGATTCTCAATGTCAAGTAGCCACAACCAGCAATAAATATGATCAAGTATTCAAAAAGGTTCCTGTTCAGAATTGGAACGACCACAAAGAGGATGCCTATTACCACACGGCTGTCGCCTGTAGCTCATCAAATTCTTTAACACCCGTGAATGGTGCCGCTGAGACGCTACCCAAGCATTTGGAAAGTCATAACACGATCTTCTACGGAAGCAAGGATCTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGAGACATCACTCGTGTTGAAACAAGGATACCTGTACGATCAGCAGCAAAAGATGCAAGCTAGATTTTCGTCAAGTAACTGTGGCTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAGTTGTTGGAAGGAGACTTTGGATGTGATAGTTACCCGATCGGAACATGCATGTGA 2073 43.8 MTVEPRVDDPTDQFPSGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSDNLDKPDSETGEEAADSNGKFNKKRKDQNYNEDEDQDYNGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVDKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLSGPPQFPNTAFRSIPTTGMLGRLNTPACMGMHSLPSPGTVQLGSLNNPSNDQPAFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDDLSPDFDERTVFPASIGLPNATMTAGSLSNPLLGLTNDPLISEVQHHEVHSGRKFGPQSSISVVSSNSESSRPSLDNARCTGDNWSKAVHSSRIHLNTIPSNNLSNISTSYHSHLRDNTTGALHIGNCLSDISSITSISTQSRDSQTDSQCQVATTSNKYDQVFKKVPVQNWNDHKEDAYYHTAVACSSSNSLTPVNGAAETLPKHLESHNTIFYGSKDLNVTSQANVLDHAMVEHDQFKKSAMETSLVLKQGYLYDQQQKMQARFSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDSYPIGTCM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3306819 3313016 - MC11g0419 Mch11g0515 679449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0515 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Mch11g0515 690 MobiDBLite consensus disorder prediction 438 462 - -
Mch11g0515 690 FunFam Two-component response regulator 18 175 - -
Mch11g0515 690 Gene3D - 17 151 - -
Mch11g0515 690 MobiDBLite consensus disorder prediction 141 180 - -
Mch11g0515 690 MobiDBLite consensus disorder prediction 141 197 - -
Mch11g0515 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Mch11g0515 690 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Mch11g0515 690 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Mch11g0515 690 FunFam Two-component response regulator 194 257 - -
Mch11g0515 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 387 IPR045279 GO:0009736(InterPro)
Mch11g0515 690 MobiDBLite consensus disorder prediction 431 462 - -
Mch11g0515 690 CDD REC_typeB_ARR-like 20 134 - -
Mch11g0515 690 Gene3D - 194 257 - -
Mch11g0515 690 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Mch11g0515 690 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Mch11g0515 690 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Mch11g0515 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Mch11g0515 690 SUPERFAMILY CheY-like 16 146 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0515 K14491 - - csv:101215220 1195.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0515 Mch-Chr11:3306819 Mch5g0747 Mch-Chr5:5033128 9.10E-97 dispersed
Mch6g0537 Mch-Chr6:3641458 Mch11g0515 Mch-Chr11:3306819 4.93E-47 transposed
Mch11g0515 Mch-Chr11:3306819 Mch6g0639 Mch-Chr6:4371040 1.53E-125 wgd
Mch11g0515 Mch-Chr11:3306819 Mch8g3032 Mch-Chr8:32922850 1.67E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g523 . . Bda01g00668 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1730 . . . . . . . . Bhi09g02983 Tan01g3584 Cmetu02g1625 . Hepe01g1979 Mch11g0515 . . . . . . . . . . . Cme07g00108
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0075 . 52 255 Response Regulator Gene Family AT3G16857 53.1 1.6e-54 211.1
Mch7g1214 . 25 284 Response Regulator Gene Family AT4G31920 55.0 1.7e-71 267.3
Mch5g0747 . 16 293 Response Regulator Gene Family AT4G31920 51.6 1.6e-69 260.8
Mch8g0075 . 11 258 Response Regulator Gene Family AT4G31920 51.8 3.7e-63 239.6
Mch5g0747 . 99 262 Response Regulator Gene Family AT1G67710 54.7 8.0e-40 161.8
Mch11g0515 . 93 256 Response Regulator Gene Family AT1G67710 54.1 8.0e-40 161.8
Mch7g1214 . 108 271 Response Regulator Gene Family AT1G67710 52.4 3.4e-38 156.4
Mch8g3032 . 17 352 Response Regulator Gene Family AT2G25180 55.3 2.2e-85 313.5
Mch6g0639 . 16 372 Response Regulator Gene Family AT2G25180 50.7 1.1e-84 311.2
Mch8g0075 . 11 255 Response Regulator Gene Family AT2G25180 55.1 2.4e-68 256.9
Mch7g1214 . 88 319 Response Regulator Gene Family AT2G01760 50.6 1.2e-53 207.2
Mch8g0075 . 72 258 Response Regulator Gene Family AT2G01760 50.5 1.5e-45 180.3
Mch8g3032 . 79 277 Response Regulator Gene Family AT2G01760 51.9 6.3e-39 158.3
Mch7g1214 . 27 300 Response Regulator Gene Family AT5G58080 51.3 2.3e-69 260.4
Mch8g0075 . 9 257 Response Regulator Gene Family AT5G58080 51.2 4.3e-63 239.6
Mch7g1214 . 26 251 Response Regulator Gene Family AT4G16110 67.5 3.1e-80 296.6
Mch5g0747 . 18 242 Response Regulator Gene Family AT4G16110 67.4 1.5e-79 294.3
Mch11g0515 . 11 234 Response Regulator Gene Family AT4G16110 57.9 1.1e-61 235.0
Mch8g0075 . 11 234 Response Regulator Gene Family AT4G16110 53.8 3.3e-58 223.4
Mch8g3032 . 11 263 Response Regulator Gene Family AT4G16110 51.7 5.3e-56 216.1
Mch6g0639 . 17 237 Response Regulator Gene Family AT4G16110 52.7 2.5e-50 197.2
Mch9g2202 . 12 164 Response Regulator Gene Family AT3G48100 65.8 1.4e-51 199.5
Mch6g0185 . 2 146 Response Regulator Gene Family AT3G48100 72.1 7.1e-51 197.2
Mch4g1566 . 11 147 Response Regulator Gene Family AT3G48100 59.9 5.6e-40 161.0
Mch1g0440 . 61 208 Response Regulator Gene Family AT3G48100 57.4 9.6e-40 160.2
Mch4g1781 . 1 159 Response Regulator Gene Family AT3G48100 51.9 3.6e-39 158.3
Mch9g2202 . 1 193 Response Regulator Gene Family AT1G59940 60.8 2.8e-55 212.6
Mch6g0185 . 1 131 Response Regulator Gene Family AT1G59940 69.5 9.8e-48 187.6
Mch4g1566 . 5 148 Response Regulator Gene Family AT1G59940 60.4 8.9e-41 164.5
Mch4g1781 . 17 156 Response Regulator Gene Family AT1G59940 58.9 1.9e-38 156.8
Mch1g0440 . 62 206 Response Regulator Gene Family AT1G59940 57.2 2.4e-38 156.4
Mch9g1380 . 17 144 Response Regulator Gene Family AT1G59940 63.3 2.4e-38 156.4
Mch9g2202 . 16 185 Response Regulator Gene Family AT1G10470 66.5 4.5e-53 204.9
Mch6g0185 . 1 138 Response Regulator Gene Family AT1G10470 68.8 4.4e-48 188.3
Mch4g1566 . 5 148 Response Regulator Gene Family AT1G10470 58.3 4.4e-40 161.8
Mch4g1781 . 17 182 Response Regulator Gene Family AT1G10470 51.8 3.7e-39 158.7
Mch1g0440 . 68 206 Response Regulator Gene Family AT1G10470 61.9 1.1e-38 157.1
Mch9g1380 . 5 144 Response Regulator Gene Family AT1G10470 59.3 5.9e-37 151.4
Mch9g2202 . 12 164 Response Regulator Gene Family AT3G48100 65.8 1.4e-51 199.5
Mch6g0185 . 2 146 Response Regulator Gene Family AT3G48100 72.1 7.1e-51 197.2
Mch4g1566 . 11 147 Response Regulator Gene Family AT3G48100 59.9 5.6e-40 161.0
Mch1g0440 . 61 208 Response Regulator Gene Family AT3G48100 57.4 9.6e-40 160.2
Mch4g1781 . 1 159 Response Regulator Gene Family AT3G48100 51.9 3.6e-39 158.3
Mch6g0185 . 2 134 Response Regulator Gene Family AT5G62920 75.2 4.6e-50 194.5
Mch9g2202 . 25 175 Response Regulator Gene Family AT5G62920 68.2 1.0e-49 193.4
Mch4g1566 . 11 147 Response Regulator Gene Family AT5G62920 59.9 7.4e-40 160.6
Mch4g1781 . 1 154 Response Regulator Gene Family AT5G62920 55.5 4.8e-39 157.9
Mch1g0440 . 63 208 Response Regulator Gene Family AT5G62920 58.2 2.4e-38 155.6
Mch6g0185 . 1 139 Response Regulator Gene Family AT1G19050 71.9 5.1e-50 194.5
Mch9g2202 . 15 185 Response Regulator Gene Family AT1G19050 57.6 1.0e-45 180.3
Mch4g1566 . 9 150 Response Regulator Gene Family AT1G19050 53.5 5.9e-38 154.5
Mch1g0440 . 51 208 Response Regulator Gene Family AT1G19050 51.9 1.0e-37 153.7
Mch4g1781 . 17 148 Response Regulator Gene Family AT1G19050 60.9 5.0e-37 151.4
Mch1g0440 . 59 210 Response Regulator Gene Family AT2G41310 73.7 3.1e-56 215.3
Mch4g1566 . 8 147 Response Regulator Gene Family AT2G41310 69.3 1.9e-50 196.1
Mch4g1781 . 10 155 Response Regulator Gene Family AT2G41310 60.1 2.1e-44 176.0
Mch9g2202 . 25 158 Response Regulator Gene Family AT2G41310 60.3 3.9e-43 171.8
Mch6g0185 . 1 131 Response Regulator Gene Family AT2G41310 59.7 2.6e-39 159.1
Mch9g1380 . 19 144 Response Regulator Gene Family AT2G41310 57.3 3.8e-38 155.2
Mch1g0440 . 59 319 Response Regulator Gene Family AT3G57040 51.3 4.0e-59 224.9
Mch4g1566 . 1 147 Response Regulator Gene Family AT3G57040 70.5 3.6e-52 201.8
Mch9g2202 . 25 158 Response Regulator Gene Family AT3G57040 60.8 5.6e-45 177.9
Mch4g1781 . 13 186 Response Regulator Gene Family AT3G57040 55.3 7.4e-45 177.6
Mch6g0185 . 1 131 Response Regulator Gene Family AT3G57040 61.7 1.7e-41 166.4
Mch9g1380 . 17 144 Response Regulator Gene Family AT3G57040 56.3 5.1e-38 154.8
Mch6g0185 . 1 145 Response Regulator Gene Family AT1G74890 71.7 3.9e-50 194.9
Mch9g2202 . 25 223 Response Regulator Gene Family AT1G74890 56.7 3.1e-47 185.3
Mch1g0440 . 63 206 Response Regulator Gene Family AT1G74890 56.9 7.0e-39 157.5
Mch4g1566 . 7 142 Response Regulator Gene Family AT1G74890 57.4 1.2e-38 156.8
Mch9g1380 . 19 144 Response Regulator Gene Family AT1G74890 60.3 3.8e-37 151.8
Mch9g1380 . 19 151 Response Regulator Gene Family AT2G40670 67.9 5.2e-45 177.6
Mch9g2202 . 26 159 Response Regulator Gene Family AT2G40670 55.5 1.9e-39 159.1
Mch6g0185 . 1 131 Response Regulator Gene Family AT2G40670 59.3 1.8e-37 152.5
Mch9g1380 . 19 151 Response Regulator Gene Family AT3G56380 69.4 2.8e-45 178.3
Mch9g2202 . 22 159 Response Regulator Gene Family AT3G56380 53.2 3.6e-40 161.4
Mch1g0440 . 64 208 Response Regulator Gene Family AT3G56380 55.5 6.8e-39 157.1
Mch6g0185 . 1 131 Response Regulator Gene Family AT3G56380 61.2 2.0e-38 155.6
Mch4g1781 . 13 152 Response Regulator Gene Family AT3G56380 57.3 3.4e-38 154.8
Mch4g1566 . 9 150 Response Regulator Gene Family AT3G56380 54.5 8.3e-37 150.2
Mch8g0075 . 52 255 Response Regulator Gene Family AT3G16857 53.1 1.6e-54 211.1
Mch7g1214 . 26 251 Response Regulator Gene Family AT4G16110 67.5 3.1e-80 296.6
Mch5g0747 . 18 242 Response Regulator Gene Family AT4G16110 67.4 1.5e-79 294.3
Mch11g0515 . 11 234 Response Regulator Gene Family AT4G16110 57.9 1.1e-61 235.0
Mch8g0075 . 11 234 Response Regulator Gene Family AT4G16110 53.8 3.3e-58 223.4
Mch8g3032 . 11 263 Response Regulator Gene Family AT4G16110 51.7 5.3e-56 216.1
Mch6g0639 . 17 237 Response Regulator Gene Family AT4G16110 52.7 2.5e-50 197.2
Mch7g1214 . 25 284 Response Regulator Gene Family AT4G31920 55.0 1.7e-71 267.3
Mch5g0747 . 16 293 Response Regulator Gene Family AT4G31920 51.6 1.6e-69 260.8
Mch8g0075 . 11 258 Response Regulator Gene Family AT4G31920 51.8 3.7e-63 239.6
Mch5g0747 . 99 262 Response Regulator Gene Family AT1G67710 54.7 8.0e-40 161.8
Mch11g0515 . 93 256 Response Regulator Gene Family AT1G67710 54.1 8.0e-40 161.8
Mch7g1214 . 108 271 Response Regulator Gene Family AT1G67710 52.4 3.4e-38 156.4
Mch8g3032 . 17 352 Response Regulator Gene Family AT2G25180 55.3 2.2e-85 313.5
Mch6g0639 . 16 372 Response Regulator Gene Family AT2G25180 50.7 1.1e-84 311.2
Mch8g0075 . 11 255 Response Regulator Gene Family AT2G25180 55.1 2.4e-68 256.9
Mch7g1214 . 88 319 Response Regulator Gene Family AT2G01760 50.6 1.2e-53 207.2
Mch8g0075 . 72 258 Response Regulator Gene Family AT2G01760 50.5 1.5e-45 180.3
Mch8g3032 . 79 277 Response Regulator Gene Family AT2G01760 51.9 6.3e-39 158.3
Mch7g1214 . 27 300 Response Regulator Gene Family AT5G58080 51.3 2.3e-69 260.4
Mch8g0075 . 9 257 Response Regulator Gene Family AT5G58080 51.2 4.3e-63 239.6
Mch1g0773 . 68 214 Response Regulator Gene Family AT5G60100 80.3 2.0e-61 233.4
Mch6g1811 . 84 221 Response Regulator Gene Family AT5G60100 61.6 2.0e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009381 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42577 PF00072 Response_reg 3.20E-23 CL0304 Mch TF