Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0515 ATGACGGTTGAGCCGCGAGTCGACGACCCAACTGATCAATTTCCGTCTGGAATGCGTGTGCTCGCCGTTGACGACGATCCCACTTGCCTTTTGATTTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACTAATCAGGCTGTTATGGCGCTGAAGTTGTTGAGAGAAAACAAGAACAAGTTCGACGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGGCTGGAGATGGACCTACCTGTTATTATGCTGTCTGCAAATGGTGATCCCAAGCTTGTGATGAAAGGAATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAATTTGATCCGAAGGACCGAATGAATTCTGACAATCTGGACAAGCCTGATTCTGAGACCGGGGAAGAAGCAGCTGATTCAAATGGGAAATTTAATAAAAAGAGGAAGGATCAGAACTACAATGAAGATGAGGACCAGGACTATAATGGGCAAGAGAATGATGACTCGTCGACCCAGAAGAAACCTCGCGTTGTTTGGTCTGTGGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAATGTAGATAAGCTCACAAGAGAAAATGTAGCCAGCCATCTCCAGAAATACAGGCTTTATCTCAAAAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGTGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCCTTGAGTGGACCTCCACAGTTTCCCAACACTGCTTTCAGATCTATCCCGACTACTGGGATGCTTGGTCGATTGAATACTCCTGCTTGTATGGGTATGCACAGCCTTCCTTCTCCGGGTACAGTTCAACTGGGTAGTTTGAACAATCCAAGCAATGATCAGCCTGCATTTCAGCCAATCATGCTTTCTGGAAACCGCAGCGGGAATATTTTCCGAGGAATGCCAGAGCCCTCAGAACTTGATCAACTACAACATGTTAAGCATGGGACCCATGTGGACGACCTCTCTCCTGATTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTACCAAATGCAACTATGACTGCTGGTAGCTTGAGCAATCCTCTTTTAGGATTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTCCACAGTGGTCGAAAATTTGGACCTCAATCTTCCATTTCAGTAGTATCCTCCAACTCAGAAAGTTCACGTCCTTCTCTAGATAATGCTAGATGCACCGGTGACAATTGGTCGAAAGCTGTTCATTCATCCAGGATCCACTTGAATACCATTCCATCCAACAACCTTTCTAATATCTCTACTTCCTACCATAGTCACTTGAGAGACAATACTACCGGTGCATTGCATATTGGAAATTGTCTTTCTGACATTTCTTCCATCACTTCAATATCTACCCAGTCCCGTGATTCGCAAACAGATTCTCAATGTCAAGTAGCCACAACCAGCAATAAATATGATCAAGTATTCAAAAAGGTTCCTGTTCAGAATTGGAACGACCACAAAGAGGATGCCTATTACCACACGGCTGTCGCCTGTAGCTCATCAAATTCTTTAACACCCGTGAATGGTGCCGCTGAGACGCTACCCAAGCATTTGGAAAGTCATAACACGATCTTCTACGGAAGCAAGGATCTTAATGTGACTAGTCAAGCAAATGTTCTTGATCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGAGACATCACTCGTGTTGAAACAAGGATACCTGTACGATCAGCAGCAAAAGATGCAAGCTAGATTTTCGTCAAGTAACTGTGGCTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAGTTGTTGGAAGGAGACTTTGGATGTGATAGTTACCCGATCGGAACATGCATGTGA 2073 43.8 MTVEPRVDDPTDQFPSGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSDNLDKPDSETGEEAADSNGKFNKKRKDQNYNEDEDQDYNGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVDKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLSGPPQFPNTAFRSIPTTGMLGRLNTPACMGMHSLPSPGTVQLGSLNNPSNDQPAFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDDLSPDFDERTVFPASIGLPNATMTAGSLSNPLLGLTNDPLISEVQHHEVHSGRKFGPQSSISVVSSNSESSRPSLDNARCTGDNWSKAVHSSRIHLNTIPSNNLSNISTSYHSHLRDNTTGALHIGNCLSDISSITSISTQSRDSQTDSQCQVATTSNKYDQVFKKVPVQNWNDHKEDAYYHTAVACSSSNSLTPVNGAAETLPKHLESHNTIFYGSKDLNVTSQANVLDHAMVEHDQFKKSAMETSLVLKQGYLYDQQQKMQARFSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDSYPIGTCM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3306819 3313016 - MC11g0419 Mch11g0515 679449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0515 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Mch11g0515 690 MobiDBLite consensus disorder prediction 438 462 - -
Mch11g0515 690 FunFam Two-component response regulator 18 175 - -
Mch11g0515 690 Gene3D - 17 151 - -
Mch11g0515 690 MobiDBLite consensus disorder prediction 141 180 - -
Mch11g0515 690 MobiDBLite consensus disorder prediction 141 197 - -
Mch11g0515 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Mch11g0515 690 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Mch11g0515 690 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Mch11g0515 690 FunFam Two-component response regulator 194 257 - -
Mch11g0515 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 387 IPR045279 GO:0009736(InterPro)
Mch11g0515 690 MobiDBLite consensus disorder prediction 431 462 - -
Mch11g0515 690 CDD REC_typeB_ARR-like 20 134 - -
Mch11g0515 690 Gene3D - 194 257 - -
Mch11g0515 690 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Mch11g0515 690 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Mch11g0515 690 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Mch11g0515 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Mch11g0515 690 SUPERFAMILY CheY-like 16 146 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0515 Mch-Chr11:3306819 Mch5g0747 Mch-Chr5:5033128 9.10E-97 dispersed
Mch6g0537 Mch-Chr6:3641458 Mch11g0515 Mch-Chr11:3306819 4.93E-47 transposed
Mch11g0515 Mch-Chr11:3306819 Mch6g0639 Mch-Chr6:4371040 1.53E-125 wgd
Mch11g0515 Mch-Chr11:3306819 Mch8g3032 Mch-Chr8:32922850 1.67E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42577 PF00072 Response_reg 3.20E-23 CL0304 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0515 K14491 - csv:101215220 1195.26