Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0518 ATGGGGAAAATGTTCTGTAGACTTGCTTTGGTGTCGAAGAAGAAGAAGAGTGGAGCAGTGCCGGTTTATTTGAACGTCTATGATCTGACGCCGATCAATGGCTACGCGTATTGGTTCGGTCTCGGGGTCTACCATTCGGGCGTGCAAGTTCATGGAGTTGAATATGCGTTTGGAGCACATGATCATGCAACTTCAGGGATATTTGAGGTAGAACCAAGACAATGTCCTGGTTTTACATTTAGGAAATCAATTTGCATAGGACGAACGAATCTCGGTCCAAAAGAGGTTCGATCGTTTATGGAGAAACTAGCCGAAGAGTACTCTGGCAACACATATCATTTGATAACAAAAAATTGCAACCACTTTTGCAACGATGTGTGCGTAAGGTTGGCAGGAAAACCAATCCCTAGCTGGGTCAACCGTCTTGCCCGACTTGGTCTTTTCTGCAACTGTGTTCTTCCAGCGAGTTTGAACGAAGCTAAGGTTCGGCAAGTGAGACCAGGAGGTAGGATTAGCCAAGCTAGCGAAGGTGTAAAAAAGCAATTGAGAAGCAACTCAAGTAGGCATAATAACGAATCTCCTTCCAACTCTTCACCACCAACATTGTCATCCAATCCTCCAAGTTCATCAACCATCAAAGTAAGTAGACAAAAACGATGCCTCCCGCCATCTTCATCGCTGATTCATTCTTCATCAAATGCAGCCCTGACTATAAAGCTC 720 44.72 MGKMFCRLALVSKKKKSGAVPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEYAFGAHDHATSGIFEVEPRQCPGFTFRKSICIGRTNLGPKEVRSFMEKLAEEYSGNTYHLITKNCNHFCNDVCVRLAGKPIPSWVNRLARLGLFCNCVLPASLNEAKVRQVRPGGRISQASEGVKKQLRSNSSRHNNESPSNSSPPTLSSNPPSSSTIKVSRQKRCLPPSSSLIHSSSNAALTIKL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3331946 3334206 + MC11g0422 Mch11g0518 679452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0518 240 MobiDBLite consensus disorder prediction 164 216 - -
Mch11g0518 240 SMART DUF862_2a 20 158 IPR008580 GO:0008233(InterPro)
Mch11g0518 240 MobiDBLite consensus disorder prediction 187 216 - -
Mch11g0518 240 Pfam PPPDE putative peptidase domain 21 155 IPR008580 GO:0008233(InterPro)
Mch11g0518 240 ProSiteProfiles PPPDE domain profile. 20 157 IPR008580 GO:0008233(InterPro)
Mch11g0518 240 Gene3D PPPDE domains 15 167 IPR042266 -
Mch11g0518 240 PANTHER DESUMOYLATING ISOPEPTIDASE 19 205 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0518 K22763 - - csv:101215693 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0131 Mch-Chr10:766956 Mch11g0518 Mch-Chr11:3331946 1.45E-21 dispersed
Mch11g0518 Mch-Chr11:3331946 Mch8g0755 Mch-Chr8:5343477 1.25E-75 dispersed
Mch11g0518 Mch-Chr11:3331946 Mch8g1079 Mch-Chr8:7632206 6.94E-81 wgd
Mch11g0518 Mch-Chr11:3331946 Mch8g0490 Mch-Chr8:3442755 2.14E-107 wgd
Mch11g0518 Mch-Chr11:3331946 Mch9g0456 Mch-Chr9:3404826 2.89E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g527 . . Bda01g00759 . . . . . . . Cma01g01477 . Car09g00374 . Sed09g0886 . . Bhi04g00039 Tan02g2754 Cmetu02g2111 . Hepe10g0224 . Lcy13g1819 . . . . . . . . . . . . . . . . Blo18g00013 . . . . Bma01g01268 . Sed05g1728 Cmo01g01533 Cmo09g00429 . . . . . . Bhi09g02978 Tan01g3588 Cmetu07g0071 . Hepe01g1982 Mch11g0518 . . . . . . . . . . Chy03g01091 Cme07g00105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68