Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0520 | ATGGCTCCGCGATTGCCGTCTTTGTCAGCAACGAGTAAATATAAAACACCCATTTGCTTCCCTTCTGAGAAACTACGAATTTGTGCTCTGTTTTTCTCTGCGGCATTTTCACAAACACCTTGTGGGGGTCAAAAAACCAGTTATGCCATAGCCATGGCCAGGCCGCAAAAGCGCTACCGTGGCGTACGGCAGCGGCATTGGGGCTCTTGGGTGTCTGAGATTCGGCATCCATTATTGAAGACGAGGATTTGGCTGGGGACATTTGAGACGGCGGAGGACGCGGCGAGGGCGTACGACGAGGCGGCGAGATTGATGTGTGGGCCAAAAGCGAGGACGAATTTTGCGTACAATCCAAACGGAGTTCAGTGTTGTAAGCTTCTGTCGGCGAATTTAACGGCGAAATTGCATCGGTGCTACGTGGCTTCTCTGCAGATCGGTAGCCAAGGCCCAAGGGGATTCAGAAGAGAGCACCTGGCGGCGCCGGCGCCGGCGCCGGTGGTGGTGATGGAGGAGCAGCCGCCGTATGCGGCGGGGAGGAATGTGAAAAGGGAAAGTGAGTGTGGGGAACTGAAGGTATTGGAGGATGATCATATCGAGCAGATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTCTGTTTCTGA | 648 | 53.4 | MAPRLPSLSATSKYKTPICFPSEKLRICALFFSAAFSQTPCGGQKTSYAIAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPNGVQCCKLLSANLTAKLHRCYVASLQIGSQGPRGFRREHLAAPAPAPVVVMEEQPPYAAGRNVKRESECGELKVLEDDHIEQMIEELLYYGSMEFCF | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3342964 | 3344298 | - | MC11g0424 | Mch11g0520 | 679454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0520 | 215 | FunFam | Ethylene-responsive transcription factor 2 | 57 | 116 | - | - | |
Mch11g0520 | 215 | CDD | AP2 | 57 | 117 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | SMART | rav1_2 | 58 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | Gene3D | AP2/ERF domain | 57 | 116 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | ProSiteProfiles | AP2/ERF domain profile. | 58 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 52 | 161 | IPR050913 | - | |
Mch11g0520 | 215 | Pfam | AP2 domain | 58 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | PRINTS | Ethylene responsive element binding protein signature | 81 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | PRINTS | Ethylene responsive element binding protein signature | 59 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0520 | 215 | SUPERFAMILY | DNA-binding domain | 58 | 116 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0520 | Mch-Chr11:3342964 | Mch8g0488 | Mch-Chr8:3428700 | 9.37E-61 | dispersed | |
Mch11g0520 | Mch-Chr11:3342964 | Mch8g1082 | Mch-Chr8:7650517 | 3.35E-47 | wgd | |
Mch11g0520 | Mch-Chr11:3342964 | Mch8g0487 | Mch-Chr8:3421508 | 2.70E-64 | wgd | |
Mch11g0520 | Mch-Chr11:3342964 | Mch9g0451 | Mch-Chr9:3355608 | 1.47E-20 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42579 | PF00847 | AP2 | 8.80E-12 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0520 | - | - | - | 0.0 |