Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0520 ATGGCTCCGCGATTGCCGTCTTTGTCAGCAACGAGTAAATATAAAACACCCATTTGCTTCCCTTCTGAGAAACTACGAATTTGTGCTCTGTTTTTCTCTGCGGCATTTTCACAAACACCTTGTGGGGGTCAAAAAACCAGTTATGCCATAGCCATGGCCAGGCCGCAAAAGCGCTACCGTGGCGTACGGCAGCGGCATTGGGGCTCTTGGGTGTCTGAGATTCGGCATCCATTATTGAAGACGAGGATTTGGCTGGGGACATTTGAGACGGCGGAGGACGCGGCGAGGGCGTACGACGAGGCGGCGAGATTGATGTGTGGGCCAAAAGCGAGGACGAATTTTGCGTACAATCCAAACGGAGTTCAGTGTTGTAAGCTTCTGTCGGCGAATTTAACGGCGAAATTGCATCGGTGCTACGTGGCTTCTCTGCAGATCGGTAGCCAAGGCCCAAGGGGATTCAGAAGAGAGCACCTGGCGGCGCCGGCGCCGGCGCCGGTGGTGGTGATGGAGGAGCAGCCGCCGTATGCGGCGGGGAGGAATGTGAAAAGGGAAAGTGAGTGTGGGGAACTGAAGGTATTGGAGGATGATCATATCGAGCAGATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTCTGTTTCTGA 648 53.4 MAPRLPSLSATSKYKTPICFPSEKLRICALFFSAAFSQTPCGGQKTSYAIAMARPQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPNGVQCCKLLSANLTAKLHRCYVASLQIGSQGPRGFRREHLAAPAPAPVVVMEEQPPYAAGRNVKRESECGELKVLEDDHIEQMIEELLYYGSMEFCF 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3342964 3344298 - MC11g0424 Mch11g0520 679454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0520 215 FunFam Ethylene-responsive transcription factor 2 57 116 - -
Mch11g0520 215 CDD AP2 57 117 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 SMART rav1_2 58 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 52 161 IPR050913 -
Mch11g0520 215 Pfam AP2 domain 58 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0520 215 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0520 Mch-Chr11:3342964 Mch8g0488 Mch-Chr8:3428700 9.37E-61 dispersed
Mch11g0520 Mch-Chr11:3342964 Mch8g1082 Mch-Chr8:7650517 3.35E-47 wgd
Mch11g0520 Mch-Chr11:3342964 Mch8g0487 Mch-Chr8:3421508 2.70E-64 wgd
Mch11g0520 Mch-Chr11:3342964 Mch9g0451 Mch-Chr9:3355608 1.47E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42579 PF00847 AP2 8.80E-12 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0520 - - - 0.0