Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0526 AATAGAGGAAAAATTATATCATTGTCTAAAAAACTCCGTCTCCCATGGAGTGAAATTTCTCTCTCTATCCACAAACAGTTTCATAATGTTTATAGTAGAGCACTGGAAGTAGAACCCCATATCCTCTCTCTCCCTCTCTTTCTCCTCTTCAATCTTTCTGTTCCAATCACCATTGGAAAACATACGATCCACCGCCATGGAGCTTACATAATCACTGAGCCCGTTTTGGAGCTGAGCTTTGCCTTGTTGTTGTCTCTCTGGGCTTCCATGGCGTACCACAATCACCTCTCTCAGGACCTACCTCTCCACTTCTCCGACCAGCAACAGCAGGCTGACAGCGGTTTGCGCACCATTTTGCCGGACCAGCTCGCCGGCCACTCCTCGCCGGACCCGAAGGCGGACCATCACCACCACCACCACCACCACCACCCGCTGCAGACGGCGCCGAATTGGCTCAACAACGCTCTCCTCCGCAACCAAAATCCCCATTCTCACTACTCTACCGACACCGCTACCACCGCCGCCAATACCAATTTCCTCAACCTCCACACCACTGCTTCCGATTCCACCGTCTCGCACTCCTCCAACCAATGGCTCTCCCGCCCGATCCTCCACCGGAACCACAGCGATGTAATCGACGACGTCACCGCCGCCGGCGACGCCATGATCGGTGCCGCCACCGCCGCGCTCTCGCACGATTCCGCCGACCTGAAGAACGACGCCAATAGCGGCGAGGGATTGAACAAGAGCGAGGGCATGGTGATGGAGCCAGGTGCCGGCGGCGGCGGCGGAGAGGGGGTTTTGAATTGGCAACATGCGAGATACAAAGCGGAGATTCTCGCTCATCCTCTCTACGAGCAGCTGCTCTCCGCACACGTCGCCTGCCTCCGCATCGCGACGCCCGTCGATCAATTGCCGAGGATCGACGCTCAGCTTGCTCAGTCGCAGAATGTGGTCGCTAAGTACTCGGCCTTGGGCCACACCGCTCCCCCCATGGTTGGAGATGATAAAGAACTCGATCAGTTCATGACGCATTATGTTCTTCTCCTTTGTTCGTTCAAGGAACAACTCCAACAACATGTCCGAGTTCATGCAATGGAAGCAGTGATGGCTTGCTGGGACATTGAGCAATCCCTTCAAAGTTTAACAGGAGTTTCACCTGGGGAAGGTACAGGAGCGACAATGTCGGATGACGACGACGACCAGGTCGACAGCGATACGAATTTGTTTGATGGGAGTTTAGAGGGTGCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAATCGGGTTACAAGGAAAAAATTGTGGATATAAGAGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGCCTACAGCTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCCACAAACTTGAAAAGCAAACGCAAAAGGTATAAT 1620 52.16 NRGKIISLSKKLRLPWSEISLSIHKQFHNVYSRALEVEPHILSLPLFLLFNLSVPITIGKHTIHRHGAYIITEPVLELSFALLLSLWASMAYHNHLSQDLPLHFSDQQQQADSGLRTILPDQLAGHSSPDPKADHHHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVTAAGDAMIGAATAALSHDSADLKNDANSGEGLNKSEGMVMEPGAGGGGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDTNLFDGSLEGADTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRYN 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3387090 3390858 + MC11g0429 Mch11g0526 679460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0526 540 Pfam ELK domain 441 462 IPR005539 GO:0003677(InterPro)
Mch11g0526 540 MobiDBLite consensus disorder prediction 518 534 - -
Mch11g0526 540 SMART KNOX2_2 329 384 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0526 540 Gene3D - 462 523 - -
Mch11g0526 540 MobiDBLite consensus disorder prediction 383 403 - -
Mch11g0526 540 SMART HOX_1 463 528 IPR001356 GO:0003677(InterPro)
Mch11g0526 540 Pfam Homeobox KN domain 481 520 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch11g0526 540 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 229 523 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch11g0526 540 Pfam KNOX1 domain 275 316 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0526 540 ProSiteProfiles 'Homeobox' domain profile. 461 524 IPR001356 GO:0003677(InterPro)
Mch11g0526 540 ProSiteProfiles ELK domain profile. 441 461 IPR005539 GO:0003677(InterPro)
Mch11g0526 540 CDD homeodomain 464 525 IPR001356 GO:0003677(InterPro)
Mch11g0526 540 MobiDBLite consensus disorder prediction 120 147 - -
Mch11g0526 540 SUPERFAMILY Homeodomain-like 463 527 IPR009057 -
Mch11g0526 540 Pfam KNOX2 domain 333 383 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0526 540 SMART ELK_2 441 462 IPR005539 GO:0003677(InterPro)
Mch11g0526 540 MobiDBLite consensus disorder prediction 518 540 - -
Mch11g0526 540 SMART KNOX1_2 273 317 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch11g0526 540 FunFam homeobox protein knotted-1-like 3 isoform X1 462 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0526 Mch-Chr11:3387090 Mch4g0267 Mch-Chr4:1731981 1.68E-32 dispersed
Mch6g2719 Mch-Chr6:28806765 Mch11g0526 Mch-Chr11:3387090 7.29E-126 transposed
Mch11g0526 Mch-Chr11:3387090 Mch8g0482 Mch-Chr8:3376186 2.72E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42580 PF03791 KNOX2 2.40E-21 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0526 - - - 0.0