Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0526 | AATAGAGGAAAAATTATATCATTGTCTAAAAAACTCCGTCTCCCATGGAGTGAAATTTCTCTCTCTATCCACAAACAGTTTCATAATGTTTATAGTAGAGCACTGGAAGTAGAACCCCATATCCTCTCTCTCCCTCTCTTTCTCCTCTTCAATCTTTCTGTTCCAATCACCATTGGAAAACATACGATCCACCGCCATGGAGCTTACATAATCACTGAGCCCGTTTTGGAGCTGAGCTTTGCCTTGTTGTTGTCTCTCTGGGCTTCCATGGCGTACCACAATCACCTCTCTCAGGACCTACCTCTCCACTTCTCCGACCAGCAACAGCAGGCTGACAGCGGTTTGCGCACCATTTTGCCGGACCAGCTCGCCGGCCACTCCTCGCCGGACCCGAAGGCGGACCATCACCACCACCACCACCACCACCACCCGCTGCAGACGGCGCCGAATTGGCTCAACAACGCTCTCCTCCGCAACCAAAATCCCCATTCTCACTACTCTACCGACACCGCTACCACCGCCGCCAATACCAATTTCCTCAACCTCCACACCACTGCTTCCGATTCCACCGTCTCGCACTCCTCCAACCAATGGCTCTCCCGCCCGATCCTCCACCGGAACCACAGCGATGTAATCGACGACGTCACCGCCGCCGGCGACGCCATGATCGGTGCCGCCACCGCCGCGCTCTCGCACGATTCCGCCGACCTGAAGAACGACGCCAATAGCGGCGAGGGATTGAACAAGAGCGAGGGCATGGTGATGGAGCCAGGTGCCGGCGGCGGCGGCGGAGAGGGGGTTTTGAATTGGCAACATGCGAGATACAAAGCGGAGATTCTCGCTCATCCTCTCTACGAGCAGCTGCTCTCCGCACACGTCGCCTGCCTCCGCATCGCGACGCCCGTCGATCAATTGCCGAGGATCGACGCTCAGCTTGCTCAGTCGCAGAATGTGGTCGCTAAGTACTCGGCCTTGGGCCACACCGCTCCCCCCATGGTTGGAGATGATAAAGAACTCGATCAGTTCATGACGCATTATGTTCTTCTCCTTTGTTCGTTCAAGGAACAACTCCAACAACATGTCCGAGTTCATGCAATGGAAGCAGTGATGGCTTGCTGGGACATTGAGCAATCCCTTCAAAGTTTAACAGGAGTTTCACCTGGGGAAGGTACAGGAGCGACAATGTCGGATGACGACGACGACCAGGTCGACAGCGATACGAATTTGTTTGATGGGAGTTTAGAGGGTGCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAATCGGGTTACAAGGAAAAAATTGTGGATATAAGAGAAGAAATTCTGAGAAAGAGAAGAGCTGGAAAACTCCCTGGTGACACCACCTCTGTCCTAAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGCCTACAGCTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCCACAAACTTGAAAAGCAAACGCAAAAGGTATAAT | 1620 | 52.16 | NRGKIISLSKKLRLPWSEISLSIHKQFHNVYSRALEVEPHILSLPLFLLFNLSVPITIGKHTIHRHGAYIITEPVLELSFALLLSLWASMAYHNHLSQDLPLHFSDQQQQADSGLRTILPDQLAGHSSPDPKADHHHHHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVTAAGDAMIGAATAALSHDSADLKNDANSGEGLNKSEGMVMEPGAGGGGGEGVLNWQHARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDTNLFDGSLEGADTMGFGPLIPTESERSLMERVRQELKHELKSGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRYN | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3387090 | 3390858 | + | MC11g0429 | Mch11g0526 | 679460 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0526 | 540 | Pfam | ELK domain | 441 | 462 | IPR005539 | GO:0003677(InterPro) | |
Mch11g0526 | 540 | MobiDBLite | consensus disorder prediction | 518 | 534 | - | - | |
Mch11g0526 | 540 | SMART | KNOX2_2 | 329 | 384 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch11g0526 | 540 | Gene3D | - | 462 | 523 | - | - | |
Mch11g0526 | 540 | MobiDBLite | consensus disorder prediction | 383 | 403 | - | - | |
Mch11g0526 | 540 | SMART | HOX_1 | 463 | 528 | IPR001356 | GO:0003677(InterPro) | |
Mch11g0526 | 540 | Pfam | Homeobox KN domain | 481 | 520 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Mch11g0526 | 540 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 229 | 523 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch11g0526 | 540 | Pfam | KNOX1 domain | 275 | 316 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch11g0526 | 540 | ProSiteProfiles | 'Homeobox' domain profile. | 461 | 524 | IPR001356 | GO:0003677(InterPro) | |
Mch11g0526 | 540 | ProSiteProfiles | ELK domain profile. | 441 | 461 | IPR005539 | GO:0003677(InterPro) | |
Mch11g0526 | 540 | CDD | homeodomain | 464 | 525 | IPR001356 | GO:0003677(InterPro) | |
Mch11g0526 | 540 | MobiDBLite | consensus disorder prediction | 120 | 147 | - | - | |
Mch11g0526 | 540 | SUPERFAMILY | Homeodomain-like | 463 | 527 | IPR009057 | - | |
Mch11g0526 | 540 | Pfam | KNOX2 domain | 333 | 383 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch11g0526 | 540 | SMART | ELK_2 | 441 | 462 | IPR005539 | GO:0003677(InterPro) | |
Mch11g0526 | 540 | MobiDBLite | consensus disorder prediction | 518 | 540 | - | - | |
Mch11g0526 | 540 | SMART | KNOX1_2 | 273 | 317 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Mch11g0526 | 540 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 462 | 523 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0526 | Mch-Chr11:3387090 | Mch4g0267 | Mch-Chr4:1731981 | 1.68E-32 | dispersed | |
Mch6g2719 | Mch-Chr6:28806765 | Mch11g0526 | Mch-Chr11:3387090 | 7.29E-126 | transposed | |
Mch11g0526 | Mch-Chr11:3387090 | Mch8g0482 | Mch-Chr8:3376186 | 2.72E-235 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42580 | PF03791 | KNOX2 | 2.40E-21 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0526 | - | - | - | 0.0 |