Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0545 ATGAAGCAGAGTGTATCTGAGGCAGTATCTTCAACATCGACGACGGGTTTATCGGAGCAGTCGCAATCGTCGTCGGCGCCGTTGGAGAAGGCGCAATCAATATCGGCTGCGGCGGCGGCGGAGGATTTGGCCGTGGGGTTGAGGGACGGTGGCGGGGCACAGGAAACTGTGACCGTCGATCGGCGCGGGGATTTCTCAGCCGTGTGCAGATGGGCAGTCCAAAGTTTCCCAAGAATCAAGGCTAGGGCTCTGTGGAGCAAGTACTTTGAGGTTGGGGGTTACGATTGCCGCCTGTTGATATATCCCAAGGGTGATTCTCAAGCTCTTCCTGGGTATATTTCAATCTACCTTCAAATCGTGGACCCGCGCGGCACATCGTCTTCCAAATGGGATTGCTTTGCCAGCTACCGGCTGGCCATCGTCAACGTTCTCGACGATTCCAAGACCGTTCATCGGGATTCATGGCACCGTTTCTCGAGCAAGAAGAAGTCACATGGATGGTGCGATTTTACTCCTTCTTCCACCGTGTTTGATTCTAAGCTCGGCTATCTGTTTAACAATGAGTCCATTTTGATCACTGCTGATATTCTAATCCTCAATGAGTCCGTAAACTTTACTCGGGATAACAATGAGCCTGCATCATCGATGATGATGGCATCCTCGGCTGTTACTTGTCCTACGCCCGAGGTGCTCAGCGGCAAGTTCACCTGGAAAGTTCATAATTTTAGTTTGTTTAAGGAAATGATAAAAACACAGAAAATAATGAGTCCCGTGTTCCCAGCTGGAGAGTGTAATTTGAGGATTAGCGTCTATCAGAGCTCAGTTAATGGCACAGAGTATTTATCAATGTGTCTTGAGAGTAAGGACACCGAAAAGACAGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTGAACCAGAAGCCTGCTTTGAATCACATGCATCGGGACTCATATGGGAGATTTGCAGCTGATAATAAAAGTGGGGACAATACCAGTTTGGGGTGGAATGACTACATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGATGATACTGCTGTGTTTAGTACCTCTTTTCATGTGATCAAGGAGTTTAGTAGTTTTTCGAAGAATGGTGGATTAATTGGAGGTCGGAATGGGAGTGGAATTAGAAAATTAGATGGTCACATGGGCAAATTCACATGGAGGATTGAGAACTTTACAAGGTTAAAGGATCTTTTGAAGAAGCGGAAGATTACAGGTCTTTGCATCAAGAGCCGGAGATTCCAGGTTGGGAACCGGGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCACCGTCTGTCGGTCGTGAACCAGAAGATGGAAGAGAAATCTGTTACAAAGGAGTCTCAAAACCGGTACTCCAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACTAGCCTCTTTGATCAGGATTCTGGGTTTCTTGTTCAGGATACTGTAATATTCTCAGCAGAGGTTCTTATATTAAAAGAGACATCTGTAATGCAGGATTTTAATGATCAAGACATGGAGCCAACCGGTTCTAGCTCTCTGATGGATAAGGTCGCAAAAAAAAGTTCATTTACATGGAAGGTGGAGAACTTTTTGTCCTTCAAGGAAATAATGGAGACCCGTAAAATTTTTAGTAAATTCTTTCAAGCTGGTGGTTGTGAGCTCCGTATTGGTGTGTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGACCAATCTGTTGGTAGTGATCCAGATAAAAACTTTTGGGTCAGATACAAAATGGCCGTAGTGAATCAAAAATATCCAGCCAAAACTGTGTGGAAGGAGTCTTCTATTTGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCAGATATGCTAGAAGCAGAAGCAGGTTTTCTTGTACGAGATACAGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACTGATCCGGATGAACTAATTGATTCAGAAGATAGTGAAGGAATAAGTGGTGACGAAGAAGACATTTTTAGGAACCTTCTATCTACAGCTGGATTTCATCTAACTTATGGAGATAATCCCTCACAACCGCAGGTCACTTTGCGAGAAAAACTTTTAATGGATGCCGGTGCAATTGCAGGTTTTCTTACTGGGCTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTGCTTCTTCCTACTAAGCTCTCTGGTAGCAATGACGGGAAGAAGGTCTCAAAGACTGATGAGTCGTCCCCAAGTTTAATGAATTTACTGATGGGAGTTAAAGTTTTACAGCAGGCAATTATTGATTTACTGTTGGATATAATGGTCGAATGTTGCCAACCCTCAGAAGGAAGCTCTGGAGACCCTTCTGAAGCAAATTCAGAGCCTTCTGTTCCTAGCAGTGGAGCTACTACTATACCACTGGAAGGTGAAAATGAAAATGAAAATGGAGCAACAGAGGCTGCAGATCTTCCTCCATATCAGAGAGTGGATTCCGTTGATGAAAGTAGTAGTGCACCTGCTGTTCAAAGCTGTGACATGATTAGAACCGATAAGCAGGGTAAGTCTTCACCTCAAGAGCTAATACATCCACCTGAAACATCTGCTGGGGTTTCAGAGAATGTCTTCCTTCGTGCAAAGACCAAGTGGCCCGAGCAATCTGAGGAGCTTTTAGGGTTGATTGTAAATTCATTGAGAGCTCTAGATGGGGCTGTCCCCCGAGGGTGTCCTGAGCCAAGAAGACGACCTCAGTCCGCACAAAAGATTGCTCTTGTGCTGGATAAAGCTCCCAAGCATCTACAATCTGACCTGGTAGCATTAGTACCCAAATTGGTTGAGCATTTAGAACATCCATTGGCTGCTGGTGTGCTTCTGGAACGGCTTCAACAGCCCGGTGCTGAGCCAGCACTGCGGATACCTGTTTTTGGTGCTCTTAGTCAATTGGAGTGTGGCACCGAAGTTTGGGAACAGGTTCTATTTAAATCTATTGAGTTTTTAGCAGATTCAAATGATGAGCCTCTTGCTGCTACTGTAGATTTTGTCTTTAAAGCTGGAGCTCAGTGCCAACACCTCTCGGAAGCAGTGAGATCCGTGCGTGTTAGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACTGTAAATAGCTGGGGTGATGTTGCTGACATTATACTCAGAGATATTGATTGTGATGACAATGCTGATGATTTCCACTCAAAAATATCACGTGAGCTTTTCTTATTTGGTGAACCTGGCCCTGCTTCAGAAAGTTTGCGTCCGTTGGATGAGCAGGATTTACATGCTGCTCGTCACTTTTCTGATATTTATATTTTGATTGAGATGTTATCTATACCTTGTCTTGCTGTTGAAGCATCACAAACATTTGAGAGAGCTGTTGCTCGTGGTGCCATCACGGCTAAATCTGTTGCTGTGGTCTTGGAAAAACGTCTTGCTCAAAAAGCTAATAGCAATGCTAGATTTGTAGCCGAAAGTTTCCAGCATGGAGATTCTGTAATAGATGGGGAAACTAGTGAGCAGCTGAGAGTCCAGCGGGATGATTTTACTTCTATTGTTGGCCTTGCCGAAACATTAGCACTCTCTAGAGACCCTTGTGTTAGAGGATTTGTGAAAATGCTGTATCCATTATTGTTTAAGTGGTTTGCGGGCGAGTCATATCGGGCCAGAATGCTAAAAAGACTGGTTGACCGTGTCACCAGCAGTACAGATAATAACCGAGAAGTAGATATGGATTTGGAAATTCTGGTTATGCTAATTGGTGATGAACAAGAGATAATTAGACCTGTGTTAAATATGATGCGAGATGTTGCTGAGCTAGCAAATGTTGATCGTGCTGCTCTTTGGCATCAATTATGTGCTACTGAAGATGAAATTATCCGAATTCGTGAAGAAAGCAAAGTAGAAATTTCAAATATGATGAAAGAGAAAACTGCTCTATCACAAAAACTGAGTGAATCTGAGGCCATGAACAATCGCCTGAAGACTGATATGAAGGCTGAGATGGAGCGATTTTCTCGTGAGAAAAAGGAACTTTCTGAACAAATACATGACATTGAGAGTCAGCTTGAGTGGATACGCTCGGAGCGAGATGATGAGATTACAAAGCTAACAGCTGAGAAGAAAGTTCTCCATGACCGCCTCCATGATGCTGAGACTCAAATTGCGCAATTGAAATCCCGAAAACGTGATGAGTTGAAGAAAGTGGTTAAGGAAAAAAATGCACTTGCTGAGAGGTTGAAGAGTGCCGAAGCGGCACGAAAAAGATTTGATGAACAACTGAAACGGTATGCAAATGAGAATATGACTAGGGAGGAAATCCGTCAGTCACTGGAAGATGAAGTTCGTAGGCTGACACAAACAGTTGGACAGACCGAAGGAGAAAAGAGGGAGAAGGAAGAGCAGATTGCTCGATGTGAAGCATATATTGACGGGATGGAAGCAAAATTGCAGGCCTGCCAGCAATATATTCATTCACTTGAAGCATCACTACAAGAGGAAATGTCAAGACACGCCCCTCTATACGGTGCTGGTTTGGAAGCTCTGTCGATGAAGGAGCTCGAGACGTTATCCCGAATTCATGAAGAAGGATTAAGGCAAATCCATACTCTTCAGCAGCGCAAAGGAAGTCCGGCTGGCAGTCCTCTTGTGAGCTCCCATGCCCTCTCTCACAGTCATGGATTGTACACTGCAGCACCGCCACCGATGGCTGTTGGATTACCCCCTTCGCTCATCCAGAATGGCTCGGGGATTCACGGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5046 44.11 MKQSVSEAVSSTSTTGLSEQSQSSSAPLEKAQSISAAAAAEDLAVGLRDGGGAQETVTVDRRGDFSAVCRWAVQSFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMASSAVTCPTPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGTEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGGRNGSGIRKLDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFNDQDMEPTGSSSLMDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEAEAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGSSGDPSEANSEPSVPSSGATTIPLEGENENENGATEAADLPPYQRVDSVDESSSAPAVQSCDMIRTDKQGKSSPQELIHPPETSAGVSENVFLRAKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPKHLQSDLVALVPKLVEHLEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQVLFKSIEFLADSNDEPLAATVDFVFKAGAQCQHLSEAVRSVRVRLKNLGMEVSPCVLDLLSKTVNSWGDVADIILRDIDCDDNADDFHSKISRELFLFGEPGPASESLRPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLEKRLAQKANSNARFVAESFQHGDSVIDGETSEQLRVQRDDFTSIVGLAETLALSRDPCVRGFVKMLYPLLFKWFAGESYRARMLKRLVDRVTSSTDNNREVDMDLEILVMLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEDEIIRIREESKVEISNMMKEKTALSQKLSESEAMNNRLKTDMKAEMERFSREKKELSEQIHDIESQLEWIRSERDDEITKLTAEKKVLHDRLHDAETQIAQLKSRKRDELKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSSHALSHSHGLYTAAPPPMAVGLPPSLIQNGSGIHGNGHVNGGAVGPWFNHA 1681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3486719 3498426 - MC11g0446 Mch11g0545 679479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0545 1681 CDD MATH 401 536 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 ProSiteProfiles MATH/TRAF domain profile. 400 536 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 ProSiteProfiles MATH/TRAF domain profile. 568 692 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 MobiDBLite consensus disorder prediction 898 930 - -
Mch11g0545 1681 MobiDBLite consensus disorder prediction 848 933 - -
Mch11g0545 1681 MobiDBLite consensus disorder prediction 1 29 - -
Mch11g0545 1681 SUPERFAMILY TRAF domain-like 401 542 - -
Mch11g0545 1681 CDD MATH 570 692 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 65 212 IPR008974 GO:0005515(InterPro)
Mch11g0545 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 398 557 IPR008974 GO:0005515(InterPro)
Mch11g0545 1681 Coils Coil 1396 1441 - -
Mch11g0545 1681 MobiDBLite consensus disorder prediction 850 879 - -
Mch11g0545 1681 SUPERFAMILY TRAF domain-like 230 375 - -
Mch11g0545 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 558 694 IPR008974 GO:0005515(InterPro)
Mch11g0545 1681 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 227 375 IPR008974 GO:0005515(InterPro)
Mch11g0545 1681 Coils Coil 1446 1561 - -
Mch11g0545 1681 CDD MATH 233 365 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 Pfam MATH domain 402 536 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 Pfam MATH domain 570 692 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 Pfam MATH domain 234 366 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 Pfam MATH domain 70 190 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 SMART math_3 405 517 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 SMART math_3 237 350 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 SMART math_3 573 673 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 SMART math_3 71 176 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 ProSiteProfiles MATH/TRAF domain profile. 66 196 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 SUPERFAMILY TRAF domain-like 67 204 - -
Mch11g0545 1681 Gene3D - 1437 1632 - -
Mch11g0545 1681 SUPERFAMILY TRAF domain-like 568 693 - -
Mch11g0545 1681 CDD MATH 70 196 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 ProSiteProfiles MATH/TRAF domain profile. 232 369 IPR002083 GO:0005515(InterPro)
Mch11g0545 1681 PANTHER TRAF-LIKE FAMILY PROTEIN 20 1680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0545 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0545 Mch-Chr11:3486719 Mch5g1487 Mch-Chr5:15920869 2.80E-19 dispersed
Mch11g0545 Mch-Chr11:3486719 Mch2g0049 Mch-Chr2:385898 1.60E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37