Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0555 TACAACGATCTTCAAACAGCAACCAATAATTTCTCTATGAAACTTGGTCAAGGGGGATTCGGCTCAGTATATCAAGGAGTTCTACCTGATGGAACTCGAATTGCCGTGAAGAAATTGGAAGCAATTGGTCAGGGCAAGAAGGAGTTTCGAGCCGAAGTGAGCATAATTGGGAGCATCCATCATGTTCACTTGGTCAGGCTAAAGGGCTATTGTGCTGAAGGAACACACAAGCTTCTTGCTTATGAGTACATGGGAAATGGATCTTTGGATAAATGGATTTTTAGGAAGAACAAAGAAGACTTTTTGTTGGATTGGAATACAAGATTCAATATTGCACTAGGAACAGCTAAAGGACTAGCTTACCTCCATGAAGATTGTGATGTAAAGATCATTCACTGCGACATCAAACCCGAAAATGTGCTTCTCGATGACAAGTTCCTCGCAAAGGTATCGGATTTCGGTCTAGCAAAGCTAATGACACGAGAGCAAAGCCATGTTTTTACGACTCTAAGAGGAACCAGAGGGTATCTTGCCCCAGAGTGGATCACCAACTACGCCATATCAGAGAAGAGCGATGTGTATAGCTACGGGATGGTGTTGCTTGAGATAATCGGGGGAAGAAAAAGCTTCGACTCGACAGAAACTTCCGAAAAATCCCACTTCCCAGCCTATGCATTCAAAATGTTGGAAGAAGGAAGGCTTGAAAACATCCTAGACTCAAATCTGATCATAAATGAAGGTGACGAGAGAGTTTTTACTGCCATTAAAGTTGCACTGTGGTGCATACAAGAAGATATGCACCTCAGGCCACCAATGACTAGAGTAGTCCAAATGCTCGAAGGCCTCTGCGCCGTTCCTCCGCCACCA 867 43.83 YNDLQTATNNFSMKLGQGGFGSVYQGVLPDGTRIAVKKLEAIGQGKKEFRAEVSIIGSIHHVHLVRLKGYCAEGTHKLLAYEYMGNGSLDKWIFRKNKEDFLLDWNTRFNIALGTAKGLAYLHEDCDVKIIHCDIKPENVLLDDKFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKSFDSTETSEKSHFPAYAFKMLEEGRLENILDSNLIINEGDERVFTAIKVALWCIQEDMHLRPPMTRVVQMLEGLCAVPPPP 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3560394 3561260 + MC11g0455 Mch11g0555 679489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0555 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0555 289 SMART serkin_6 9 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0555 289 Gene3D Transferase(Phosphotransferase) domain 1 84 285 - -
Mch11g0555 289 FunFam S-receptor-like kinase 5 84 288 - -
Mch11g0555 289 ProSiteProfiles Protein kinase domain profile. 9 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0555 289 FunFam serine/threonine-protein kinase PBS1-like 1 83 - -
Mch11g0555 289 Pfam Protein kinase domain 12 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0555 289 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524(InterPro)
Mch11g0555 289 CDD STKc_IRAK 15 282 - -
Mch11g0555 289 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 288 IPR051343 -
Mch11g0555 289 SUPERFAMILY Protein kinase-like (PK-like) 3 280 IPR011009 -
Mch11g0555 289 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Mch11g0555 289 PIRSF ILK 4 285 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0555 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0555 Mch-Chr11:3560394 Mch4g0198 Mch-Chr4:1323098 4.45E-103 dispersed
Mch11g0555 Mch-Chr11:3560394 Mch8g1124 Mch-Chr8:8038458 8.63E-127 wgd
Mch11g0555 Mch-Chr11:3560394 Mch8g0461 Mch-Chr8:3274081 6.23E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77051 PF00069 Pkinase 1.00E-50 CL0016 Mch PK