Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0559 | ATGGTTGAGCAGGTGAAACTTTTAATGGCCAACGCCATTAAAAGTACAACTCTCTCAGCACAGCAGACTTCCCAATTCCCACCGACACCTCTATATAAATGCCTGAAATTATTACTCTCTCTACGTTTTTCAACTCTCTCTTCACCTGTTTTATTTTCTTTTAATTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGCTGGTTGTGGTTTCTGCCCTCTGTTTCTCTCTCTCTATAGTTATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTACTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACGGCCGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAGAACCAAGCTGAAGAAGGCAGGCATGGGGATGGATCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGTACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCCTGACATGCCTGCGGCTCGACAGCGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCTGGCACTCGCGCTGCCTCCAATTGGGTCATGAGGATCGAGCTAGGAAAGAAGGAGACAGAGACGGAGACGCCATCCCCGTCGCCGTCATTGGAATCGGCAAGCGGGGAAGCAGATGGCCACCGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAATTGCTCAACTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAA | 828 | 49.88 | MVEQVKLLMANAIKSTTLSAQQTSQFPPTPLYKCLKLLLSLRFSTLSSPVLFSFNLSLSLSLSLSPSLVVVSALCFSLSIVMVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKNQAEEGRHGDGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASNWVMRIELGKKETETETPSPSPSLESASGEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSTSS | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3591294 | 3593388 | + | MC11g0459 | Mch11g0559 | 679493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0559 | 275 | CDD | AP2 | 87 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0559 | 275 | ProSiteProfiles | AP2/ERF domain profile. | 87 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0559 | 275 | MobiDBLite | consensus disorder prediction | 221 | 250 | - | - | |
Mch11g0559 | 275 | PRINTS | Ethylene responsive element binding protein signature | 110 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0559 | 275 | PRINTS | Ethylene responsive element binding protein signature | 88 | 99 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0559 | 275 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 77 | 202 | IPR050913 | - | |
Mch11g0559 | 275 | MobiDBLite | consensus disorder prediction | 142 | 163 | - | - | |
Mch11g0559 | 275 | Pfam | AP2 domain | 87 | 136 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0559 | 275 | SMART | rav1_2 | 87 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g0559 | 275 | FunFam | Ethylene-responsive transcription factor 2 | 86 | 145 | - | - | |
Mch11g0559 | 275 | SUPERFAMILY | DNA-binding domain | 87 | 146 | IPR016177 | GO:0003677(InterPro) | |
Mch11g0559 | 275 | Gene3D | AP2/ERF domain | 86 | 146 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0559 | Mch-Chr11:3591294 | Mch8g0488 | Mch-Chr8:3428700 | 6.46E-30 | dispersed | |
Mch11g0559 | Mch-Chr11:3591294 | Mch6g0721 | Mch-Chr6:4958144 | 1.27E-62 | wgd | |
Mch11g0559 | Mch-Chr11:3591294 | Mch8g1129 | Mch-Chr8:8077157 | 7.69E-62 | wgd | |
Mch11g0559 | Mch-Chr11:3591294 | Mch8g3079 | Mch-Chr8:33261065 | 2.78E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42583 | PF00847 | AP2 | 7.20E-13 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0559 | - | - | - | 0.0 |