Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0559 ATGGTTGAGCAGGTGAAACTTTTAATGGCCAACGCCATTAAAAGTACAACTCTCTCAGCACAGCAGACTTCCCAATTCCCACCGACACCTCTATATAAATGCCTGAAATTATTACTCTCTCTACGTTTTTCAACTCTCTCTTCACCTGTTTTATTTTCTTTTAATTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCGCTGGTTGTGGTTTCTGCCCTCTGTTTCTCTCTCTCTATAGTTATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATCCGCCACCCATTACTGAAGAGAAGGGTGTGGCTGGGGACATTTGACACGGCCGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCGAAGAACCAAGCTGAAGAAGGCAGGCATGGGGATGGATCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGTACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCCCTGACATGCCTGCGGCTCGACAGCGACAACGCCCACATCGGTGTCTGGCAGAAGCGCGCTGGCACTCGCGCTGCCTCCAATTGGGTCATGAGGATCGAGCTAGGAAAGAAGGAGACAGAGACGGAGACGCCATCCCCGTCGCCGTCATTGGAATCGGCAAGCGGGGAAGCAGATGGCCACCGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAATTGCTCAACTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAA 828 49.88 MVEQVKLLMANAIKSTTLSAQQTSQFPPTPLYKCLKLLLSLRFSTLSSPVLFSFNLSLSLSLSLSPSLVVVSALCFSLSIVMVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKNQAEEGRHGDGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASNWVMRIELGKKETETETPSPSPSLESASGEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSTSS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3591294 3593388 + MC11g0459 Mch11g0559 679493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0559 275 CDD AP2 87 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0559 275 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0559 275 MobiDBLite consensus disorder prediction 221 250 - -
Mch11g0559 275 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0559 275 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0559 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 77 202 IPR050913 -
Mch11g0559 275 MobiDBLite consensus disorder prediction 142 163 - -
Mch11g0559 275 Pfam AP2 domain 87 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0559 275 SMART rav1_2 87 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g0559 275 FunFam Ethylene-responsive transcription factor 2 86 145 - -
Mch11g0559 275 SUPERFAMILY DNA-binding domain 87 146 IPR016177 GO:0003677(InterPro)
Mch11g0559 275 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0559 Mch-Chr11:3591294 Mch8g0488 Mch-Chr8:3428700 6.46E-30 dispersed
Mch11g0559 Mch-Chr11:3591294 Mch6g0721 Mch-Chr6:4958144 1.27E-62 wgd
Mch11g0559 Mch-Chr11:3591294 Mch8g1129 Mch-Chr8:8077157 7.69E-62 wgd
Mch11g0559 Mch-Chr11:3591294 Mch8g3079 Mch-Chr8:33261065 2.78E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42583 PF00847 AP2 7.20E-13 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0559 - - - 0.0