Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch11g0576 | ATGGGACTATTAGGAAGATCAATGTGCGGGAGAGAGCCGGAGAAGGAGATTGAGCAATTGTCGCGAGACGACGGCAGCCAATACAGTCTCACCGGCGGAATCCTGCCGCCGCTCGGTGTCAACGGCCGGAACAATCGCAGAGGCAAACTCCGCGCGCACATTATTTCGCCTTTCGATTACAATTACAGACTTTGGGAGACGTTTCTGATATTTCTGGTGCTCTACACCGCCTGGGTTTGCCCGTTTGAGTTTGGATTTCTGGATATGGCCAAGGGAGTTCTTGCAATAACCGACAATGTTGTCAATGGATTTTTCGCCATTGATATAATTCTCACTTTCTTCGTCGCGTACTTGGACAAATCCTCGTATCTGCTCGTCGACGATCCTAAGCTGATTGCTCTGCGATATGTCAAAACCTGGCTGGTCTTCGACGTCGTCTCCACAATTCCGTCGGAACTCGCCCGGAAAATTCTTCCGCTTCCTGTTCAGACTTATGGCTACTTCAATATGCTTCGTCTATGGCGTCTCCGCCGAGTCAGCTCCATGTTCGCAAGGTTGGAAAAGGACAGGAACTTCAACTATTTCTGGGTTCGATGCGCAAAGCTCATATTTGTGTGTCTGTTTGCAGTTCATTTTGCTGGGTGCTGCTTCTTTCTAATCGCTTCACATATGAGTGACCCCAAAAAGACATGGATGGGGCTATTCGTAGACGACTTTCGTCAAGAGAGTTTGTGGTATTGTTATGTGACTTCAATTTACTGGTCAATTGTCACTCTCACAACCACTGGCTATGGCGATCTGCATCCTGTCAATGAGAAAGAGATGTCATTTGTCATCTGTTACCTCTTCTTTGTTCTGGGATTGCAGGCTTACCTCATTGGTAATATGACTAACTTGGTCGTCCATGGCACCGGCCGAACCAGAAAATTTAGGGACACAATTCAAGCTGCCTCAAATTTCGCCCAAAGAAATCAACTACCAGTTCGGCTGCAAGAACAGATGCTTGCGCATCTGTGTTTGAAGCACAGGACTGACTCAGAGGGATTACAACAGCAAGAGACAGTTGATGCTCTTCCAAAAGCCATTAGATCAAGCATCTCACACCATCTCTTCTACTCCCTTGTTGATAGTGTTTATTTGTTTAATGGAGTGTCCACCGACTTAATCTTTCAACTGGTAACAGAAATGAAGGCCGAGTACTTCCCTCCCAAAGAAGACATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATAGTTGTCACTGGTGCTGCTGATCTTATCATACAAAGGAATGGATTGGAAGAGATCGTCGGTGAAGCAAAGCCAGGAGATGTCATTGGAGAGATAGGCGTTCTCTGTTATCGACCACAACTGTTCACTGTTCGAACCTGCCGACTGAGTCAACTGTTACGGATGAACCGCACTTCGTTTTTCAACCTAGTGCAAGCAAGTGTTGGGGATGGGTCAATAATAATGAACAATCTCCTCAAGCACCTGAGGGAGATAAAAGACCCCATGATGGAGGAAATTCTGCAAGAAACACAGCAGACACTGACTCGGTCTGGGATGGAAATGCCTCACAGTTTATGCTACGCAGCAAACAATGGCGATGACTTATTGTTGCATAAGTTGCTAAAGCGGGGCTCACATCCAAATGAAGTAGACAACAGTAATGGGAAGACACCACTTCATATCGCTGCATCTAAAGGAAACGAACACTGTGTAGTTCTACTCCTAGAGTATGGGGCAGACCCGAACCAGAGAGATTTTGAAGGAAGCACTCCCCTGTGGGAAGCAATACAGGGGAAACATGAGTCTATAGTTAAGCTTCTCATGGACAATGGTGCCGATATTTCTGCGGGTGACATTGGCAGTTTTGCATGCTCTGCTGCTGAGCAGAACAGCACAGATATGCTCAAATCCCTTGTCCTATGTGGGGGAGACATAACGCAGCCGAGAAGCAACGGAACTACTGCTCTTCACATGTCAGTATGTGAAGGAAACAGTGAAATGGTTAAGCTCCTTTTAGAACAAGGAGGTGACATCGATAAGCCAGATATTCATGGATGGACTCCTCGTGCCTTAGCAGATCAGCAAGGCCATGAAGAGATAAAAGAACTATTCTCTGCTGTTAAGCAAGCTGCGAGTAAACCACATACTGTTCAAATTCCACAAAGTCTAGACCTACCATACATGCAGAAGTTCCAAAGTGAGTCGAACATGCCTCGATTTTCTCAAGAATCCTCCATGACTCCTGTCCGAGAATCAAATTTTTCCGACATTCCTCCAAGAAGGAGAAGGAACAATAATTACCGAAACTCACTTGTCGGGTTTATGGCAACTGCCAATACCGGTGATGGGGACAGTCAACCATCTGCATCACATGGTTATAGTGGTGGCCAGAGTGTGGGGGAGGGTTACCGAGCAAGAGTTACTATCAGCTGCCCTGAAAAGGGAAATGCTGCAAAGCTTGTGCTCCTACCAAATTCCATCCAAGAACTACTTGAAATTGGAGCCAAAAAGTTTGGGTTTTACGCCACAAAGATTTTAACTCAAGAAGGAGCTGAAATTGAGGATATAGACCTTATCAGGGACGGTGATAGACTCTTTCTTGCTGGTGATGCTGGTGCCACCCTCCCCAGTAGCCACCAAGAATTGTAG | 2664 | 46.1 | MGLLGRSMCGREPEKEIEQLSRDDGSQYSLTGGILPPLGVNGRNNRRGKLRAHIISPFDYNYRLWETFLIFLVLYTAWVCPFEFGFLDMAKGVLAITDNVVNGFFAIDIILTFFVAYLDKSSYLLVDDPKLIALRYVKTWLVFDVVSTIPSELARKILPLPVQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLIFVCLFAVHFAGCCFFLIASHMSDPKKTWMGLFVDDFRQESLWYCYVTSIYWSIVTLTTTGYGDLHPVNEKEMSFVICYLFFVLGLQAYLIGNMTNLVVHGTGRTRKFRDTIQAASNFAQRNQLPVRLQEQMLAHLCLKHRTDSEGLQQQETVDALPKAIRSSISHHLFYSLVDSVYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIVVTGAADLIIQRNGLEEIVGEAKPGDVIGEIGVLCYRPQLFTVRTCRLSQLLRMNRTSFFNLVQASVGDGSIIMNNLLKHLREIKDPMMEEILQETQQTLTRSGMEMPHSLCYAANNGDDLLLHKLLKRGSHPNEVDNSNGKTPLHIAASKGNEHCVVLLLEYGADPNQRDFEGSTPLWEAIQGKHESIVKLLMDNGADISAGDIGSFACSAAEQNSTDMLKSLVLCGGDITQPRSNGTTALHMSVCEGNSEMVKLLLEQGGDIDKPDIHGWTPRALADQQGHEEIKELFSAVKQAASKPHTVQIPQSLDLPYMQKFQSESNMPRFSQESSMTPVRESNFSDIPPRRRRNNNYRNSLVGFMATANTGDGDSQPSASHGYSGGQSVGEGYRARVTISCPEKGNAAKLVLLPNSIQELLEIGAKKFGFYATKILTQEGAEIEDIDLIRDGDRLFLAGDAGATLPSSHQEL | 887 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3675599 | 3682946 | + | MC11g0475 | Mch11g0576 | 679510 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch11g0576 | 887 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 482 | IPR000595 | - | |
| Mch11g0576 | 887 | MobiDBLite | consensus disorder prediction | 743 | 757 | - | - | |
| Mch11g0576 | 887 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
| Mch11g0576 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 656 | 688 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | CDD | CAP_ED | 380 | 483 | IPR000595 | - | |
| Mch11g0576 | 887 | Gene3D | - | 63 | 301 | - | - | |
| Mch11g0576 | 887 | MobiDBLite | consensus disorder prediction | 743 | 802 | - | - | |
| Mch11g0576 | 887 | FunFam | Potassium channel KAT2 | 368 | 504 | - | - | |
| Mch11g0576 | 887 | Gene3D | Jelly Rolls | 339 | 518 | IPR014710 | - | |
| Mch11g0576 | 887 | MobiDBLite | consensus disorder prediction | 769 | 800 | - | - | |
| Mch11g0576 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 592 | 623 | - | - | |
| Mch11g0576 | 887 | ProSiteProfiles | KHA domain profile. | 811 | 887 | IPR021789 | - | |
| Mch11g0576 | 887 | FunFam | Potassium channel KAT3 | 64 | 302 | - | - | |
| Mch11g0576 | 887 | PRINTS | Ankyrin repeat signature | 608 | 622 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | PRINTS | Ankyrin repeat signature | 560 | 575 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | Pfam | Cyclic nucleotide-binding domain | 399 | 484 | IPR000595 | - | |
| Mch11g0576 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch11g0576 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch11g0576 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch11g0576 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch11g0576 | 887 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch11g0576 | 887 | Pfam | KHA, dimerisation domain of potassium ion channel | 811 | 872 | IPR021789 | - | |
| Mch11g0576 | 887 | SUPERFAMILY | Ankyrin repeat | 528 | 709 | IPR036770 | - | |
| Mch11g0576 | 887 | Pfam | Ankyrin repeats (3 copies) | 530 | 621 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | Pfam | Ankyrin repeats (3 copies) | 631 | 707 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | Gene3D | - | 527 | 711 | IPR036770 | - | |
| Mch11g0576 | 887 | SUPERFAMILY | cAMP-binding domain-like | 306 | 501 | IPR018490 | - | |
| Mch11g0576 | 887 | Pfam | Ion transport protein | 62 | 306 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch11g0576 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 559 | 591 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | ProSiteProfiles | Ankyrin repeat profile. | 592 | 624 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 656 | 687 | - | - | |
| Mch11g0576 | 887 | SMART | ANK_2a | 559 | 588 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | SMART | ANK_2a | 623 | 652 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | SMART | ANK_2a | 592 | 621 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | SMART | ANK_2a | 525 | 554 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | SMART | ANK_2a | 656 | 685 | IPR002110 | GO:0005515(InterPro) | |
| Mch11g0576 | 887 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 301 | - | - | |
| Mch11g0576 | 887 | ProSiteProfiles | Ankyrin repeat region circular profile. | 559 | 590 | - | - | |
| Mch11g0576 | 887 | PANTHER | POTASSIUM CHANNEL AKT1 | 20 | 872 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0576 | Mch-Chr11:3675599 | Mch6g0758 | Mch-Chr6:5208408 | 0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch11g0576 | K21867 | - | csv:101217334 | 1316.6 |